View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7996_low_20 (Length: 320)

Name: NF7996_low_20
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7996_low_20
NF7996_low_20
[»] chr2 (9 HSPs)
chr2 (18-286)||(16661579-16661847)
chr2 (29-234)||(12245045-12245250)
chr2 (29-286)||(12235013-12235270)
chr2 (26-286)||(7542547-7542807)
chr2 (18-286)||(16657104-16657372)
chr2 (48-286)||(12258168-12258406)
chr2 (26-286)||(11999715-11999975)
chr2 (17-286)||(43625724-43625991)
chr2 (18-257)||(14703721-14703960)
[»] chr7 (26 HSPs)
chr7 (18-286)||(8585293-8585561)
chr7 (22-286)||(8628849-8629113)
chr7 (18-286)||(8667732-8668000)
chr7 (18-286)||(13333043-13333311)
chr7 (32-286)||(10493961-10494215)
chr7 (18-286)||(8671217-8671485)
chr7 (23-285)||(8659681-8659943)
chr7 (18-285)||(1301777-1302044)
chr7 (18-286)||(8654763-8655031)
chr7 (18-284)||(17268252-17268518)
chr7 (18-281)||(17260554-17260817)
chr7 (41-286)||(8545968-8546213)
chr7 (26-286)||(6789833-6790093)
chr7 (29-286)||(3147596-3147853)
chr7 (26-246)||(7877360-7877580)
chr7 (26-286)||(8602295-8602555)
chr7 (26-258)||(27830490-27830722)
chr7 (24-187)||(8590957-8591120)
chr7 (134-258)||(8640164-8640285)
chr7 (26-286)||(8582021-8582281)
chr7 (24-286)||(29577256-29577518)
chr7 (26-187)||(8382562-8382723)
chr7 (26-85)||(8610238-8610297)
chr7 (26-238)||(8647198-8647407)
chr7 (24-236)||(8635980-8636192)
chr7 (24-60)||(29581654-29581690)
[»] chr4 (3 HSPs)
chr4 (18-286)||(30775565-30775833)
chr4 (18-285)||(9335479-9335746)
chr4 (26-286)||(35132769-35133027)
[»] chr1 (3 HSPs)
chr1 (29-286)||(34466380-34466637)
chr1 (26-257)||(15595362-15595588)
chr1 (162-286)||(4678145-4678269)
[»] chr5 (1 HSPs)
chr5 (18-286)||(28220264-28220532)
[»] chr8 (1 HSPs)
chr8 (26-286)||(43745168-43745428)
[»] chr6 (1 HSPs)
chr6 (136-284)||(28911013-28911161)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 16661847 - 16661579
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16661847 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 16661748  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16661747 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 16661648  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16661647 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 16661579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 12245250 - 12245045
Alignment:
29 gcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtga 128  Q
    |||||||||||||||||  ||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||  ||   ||| ||||| |    
12245250 gcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctttaccggtgattctaaatatgcctcagcaatttctcgcatctttgtta 12245151  T
129 ggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaa 228  Q
    | || |||||||| | ||| || ||||| ||  |||||||||| || ||||| |||||| ||||  | ||||||||||| ||||||||| | ||||||||    
12245150 gtaccatagatgatacttcttcagcacatagctgcttctcctggcctttgtagttaacagtaattattggtttgtcattgacaccagcagtgaccttgaa 12245051  T
229 cggcca 234  Q
    ||||||    
12245050 cggcca 12245045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 286
Target Start/End: Original strand, 12235013 - 12235270
Alignment:
29 gcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtga 128  Q
    |||||||| |||||||| || ||||||||||| || || ||||||||||| ||||| ||  |||  ||||| ||||| || |  ||   ||| |||||||    
12235013 gcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaactggaaattgtaaatatgcctcagcgatttctcgcatctttgtga 12235112  T
129 ggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaa 228  Q
    | || |||||||| | ||| |||| ||| ||  |||||||  ||||||||||||| ||| ||||| | ||||||||||| |||||||||   ||||||||    
12235113 gtaccatagatgatacttcttcgggacatagctgcttctctcgacccttgtacttgacaataatcatgggtttgtcattgacaccagcagcgaccttgaa 12235212  T
229 cggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
     ||||||||||  | ||| | |||||||||  | |||||||| |||||||||||||||    
12235213 tggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaac 12235270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 7542547 - 7542807
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||  | || | || ||| ||||| | ||| ||||  ||   ||| ||||    
7542547 gtggcttttcgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcacagttgtttctaaatacgactcagcaatttctcgcatctttg 7542646  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    |||| || |||||||| |  || || |||   ||  | ||||||||| |||||||||||||  ||||| | ||| |||||||  |||| ||| | |||||    
7542647 tgagtaccatagatgatacctcttcagcatggagttgtttctcctgatccttgtacttaacggtaatcatgggtctgtcattgtcacccgcagtcacctt 7542746  T
226 gaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||| ||||| ||||||||||| | ||||||||| || |||||||| |||||||||||||||    
7542747 gaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaac 7542807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 16657372 - 16657104
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| ||||||||||||||||| ||||| || || ||||| || ||||| ||||| ||||| || || || || |||| | | ||||| ||||| ||       
16657372 catctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaacttctcg 16657273  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||||| ||||  |||||||| |||||||| |||||||   |  |||| |||||||| |||| || | ||||| | ||||||||||| || || |||    
16657272 catctttgtaaggatcatagatgatatttcctcagcacaaaattggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggca 16657173  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    || |||||||| |||||||| |  ||||| ||||||||||| || |||||||| |||||||| ||||||    
16657172 atgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaac 16657104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 286
Target Start/End: Complemental strand, 12258406 - 12258168
Alignment:
48 taaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttc 147  Q
    ||||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||  ||   ||| ||||| |  || | |||||| | |||    
12258406 taaaatatgcaggcacagtaacaactgcattcttaacgggtgattctaaatatgcctcagcaatttctcgcatctttgtcaataccacagatgatacttc 12258307  T
148 ctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatct 247  Q
    ||||||||||||  ||||||| |||  ||||||||| ||  ||||| | |||||| |||| ||||||||| | || || || |||||||||| ||||||     
12258306 ctcggcacaaagctgcttctcttgattcttgtactttaccgtaatcatgggtttgccattgacaccagcagtgactttaaatggccacaacattatatca 12258207  T
248 ttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    | |||||| ||  | |||||||| |||||||||||||||    
12258206 tcttgaactacttgatcactaaacttcctaccaattaac 12258168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 11999715 - 11999975
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    ||||||||||| ||||||||  |||||||||| || ||||| |||||  |||| || ||||||||||| ||||| ||||| ||||  ||   ||| || |    
11999715 gtggcttttcgttgagaatcactaaaataagctggtacagtaacaacaacattctttaccggtgattctaaatatgcctcagcaatttctcgcatcttcg 11999814  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    | || || |||||||| | ||| || ||||| ||  |||||||||| || |||||||||||| ||||  | ||||||||||| ||| ||||| | |||||    
11999815 ttagtaccatagatgatacttcttcagcacatagctgcttctcctggcctttgtacttaacagtaattattggtttgtcattgacatcagcagtgacctt 11999914  T
226 gaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||| ||||| |||| |  ||| | |||||||||  | |||||||| |||| ||||||||||    
11999915 gaatggccataacaatccatcatcttgaacaacaagatcactaaacttccaaccaattaac 11999975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 43625724 - 43625991
Alignment:
17 acatccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtg---attccaaataagcctctgcaacct 113  Q
    ||||| ||||||||||||||||||||||| || || |||||||| || || ||||||||||| || || || |   |||  ||| |   |||||||||||    
43625724 acatctatggtggcttttcgctgagaatcattgaagtaagcaggcacggtaacaactgcattctttacggggggacatt--aaaaatttctctgcaacct 43625821  T
114 ccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacacc 213  Q
    |   ||| ||||||||||  ||||| || |||||||| | |||||   ||||||| ||||||||||| || ||| ||||| | ||||||||||  || |     
43625822 ctcgcatctttgtgaggatcatagacgatatttcctcaggacaaaaacgcttctcttgacccttgtattttacaataatcattggtttgtcatccaccc- 43625920  T
214 agcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
      |||| ||| |||| ||||||||||  ||||| ||||||||||| |  |||||||| |||||||| ||||||    
43625921 --caatgaccctgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaac 43625991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 14703721 - 14703960
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    ||||||| ||||||||||  ||||||||  ||||||||||||| || || ||||||||||| ||||| | ||| || ||||| | ||| ||||  ||       
14703721 catccatagtggcttttctttgagaatcactaaaataagcaggcaccgtaacaactgcattcttaacagttgactctaaatatgtctcagcaatttctcg 14703820  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||    || || |||||||| | ||| |||||| | ||   |||||||||| |||||||||||||  ||||| | ||||||||||  || ||||||    
14703821 catcttcaccagtaccatagatgatacttcttcggcatagagcttcttctcctgatccttgtacttaaccgtaatcatgggtttgtcatcgactccagca 14703920  T
218 ataaccttgaacggccacaacagtatatctttttgaacaa 257  Q
     | ||||| || ||||| || |||||||| | ||||||||    
14703921 gtgaccttaaatggccataaaagtatatcatcttgaacaa 14703960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 8585561 - 8585293
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||| ||| ||||||| |||||| | |||||||| || |||    
8585561 catccatggtggcttttcgctgagaatcattgaaataagcaggcacagtcacaactgcattttgaacaggtgatttcaaatatgtctctgcaatcttctt 8585462  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||||||||||||||  |||||||| |||||||| ||||| |||  ||| || |||||||||||||||||| ||||| |||||||||||||||||||||      
8585461 catgtttgtgaggatgatagatgatatttcctcagcacataggttcttttcttgacccttgtacttaacagtaatcataggtttgtcattaacaccagag 8585362  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||||||||||| |||||||||| |||||| |||||||||||||| |||||||| |||||||||||||||    
8585361 ataaccttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaac 8585293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 8628849 - 8629113
Alignment:
22 catggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatg 121  Q
    |||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| || ||||||| ||||||||||||||||| || ||||||     
8628849 catggtggcttttcgctgagaatcattgaaataagcaggcacggtgacaactgcattttttacaggtgatttcaaataagcctctgcaatcttcttcata 8628948  T
122 tttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataa 221  Q
    ||||  |||| ||||||||| |||||||| ||||| |||  |||||| ||||||||||||||||||  |||| |||| |||||||||| ||||| |||||    
8628949 tttgcaaggataatagatgatatttcctcagcacataggttcttctcttgacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataa 8629048  T
222 ccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||||||| ||||| ||||  ||||| ||||||||||| || |||||||| |||||||||||||||    
8629049 ccttgaatggccagaacatgatatccttttgaacaacaggatcactaaacttcctaccaattaac 8629113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 8667732 - 8668000
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| |||||||| |||||||||||||| || || ||||| || ||||| ||||| ||||| || ||||| ||  ||| ||| ||||| ||||||||       
8667732 catctatggtggcctttcgctgagaatcattgaagtaagctggcacagtaacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcg 8667831  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||||| || || ||||| || |||||||| ||||||| | ||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |    
8667832 catctttgtaagcaccatagaagatatttcctcagcacaaaagtgcttctcttgacccttgtacttaacagtaatcataggtttgtcattaacaccagaa 8667931  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||    
8667932 ataaccttgaatggccacaacaatatatctctttgaacaacggggtcactaaacttcctaccaattaac 8668000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 13333311 - 13333043
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| |||||||| |||||||||||||| || || ||||| || ||||| ||||| ||||| || || |||||  ||| ||| ||||||||||||||       
13333311 catctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattcttgactggtgaccccatatatgcctctgcaacctctcg 13333212  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||||| ||||| |||||||| |||||||||||||||| | ||||||| ||||||||| ||||| |  ||||| |||| ||||| || ||||||| |    
13333211 catctttgtaaggaccatagatgatatttcctcggcacaaaagtgcttctcttgacccttgcacttagcggtaatcataggcttgtcgttgacaccagaa 13333112  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
     |||||||||| |||||||||| |||||| ||||||||||| || |||||||| |||||||||||||||    
13333111 gtaaccttgaatggccacaacattatatcattttgaacaaccggatcactaaacttcctaccaattaac 13333043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 32 - 286
Target Start/End: Complemental strand, 10494215 - 10493961
Alignment:
32 tttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgagga 131  Q
    ||||| ||||||||||| || ||||| || ||||| ||||| ||||| || || |||||  ||||||| ||||||||||||||   ||| ||| | ||||    
10494215 tttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactggtgaccccaaatatgcctctgcaacctctcgcatctttataagga 10494116  T
132 caatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacgg 231  Q
    | |||||||| |||||||||||||||| | ||||||| ||||||||||||||| |  ||||| ||||||||||||| ||||| | | |||||||||| ||    
10494115 ccatagatgatatttcctcggcacaaaagtgcttctcttgacccttgtacttagcggtaatcataggtttgtcattgacacctgaagtaaccttgaatgg 10494016  T
232 ccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    |||||||| |||||| ||||||||||| || |||||||| ||||| |||||||||    
10494015 ccacaacattatatcgttttgaacaaccggatcactaaacttcctgccaattaac 10493961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 8671485 - 8671217
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| ||||||||  ||||||||||||| || || ||||| || || || ||||| ||||| || |||||||| |||| ||| ||||| ||||||||       
8671485 catcaatggtggccgttcgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctcg 8671386  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||||| || || ||||| || |||||||| |||||||   |||||||  |||| | |||||| ||| ||||| ||||||||||||||||||||| |    
8671385 catctttgtaagcaccatagaagatatttcctcagcacaaaattgcttctctagaccttcgtacttgacagtaatcataggtttgtcattaacaccagaa 8671286  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||||||||||| |||||||||| ||||||| |||||||||| || |||||||| |||||||||||||||    
8671285 ataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 8659681 - 8659943
Alignment:
23 atggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgt 122  Q
    ||||||||||||||||||||||| || || || ||||| || || ||||| ||||| || || |||||    | ||| | ||||||||| ||   ||| |    
8659681 atggtggcttttcgctgagaatcattgaactatgcaggcactgtaacaacagcattcttcacaggtgacattagatatgtctctgcaacttctcgcattt 8659780  T
123 ttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataac 222  Q
    |||| || || |||||||| |||||||| ||||||| | ||||||||||||||||||||| |||| ||||| |  ||||||| || |||||||| |||||    
8659781 ttgtaagtaccatagatgatatttcctccgcacaaaagtgcttctcctgacccttgtactgaacattaatcatgagtttgtcgttcacaccagcgataac 8659880  T
223 cttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaa 285  Q
    |||||| ||||||||||  || |||||||||||||| |  |||||||| ||||||||||||||    
8659881 cttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaa 8659943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 1301777 - 1302044
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| ||||||||||||||||||||||| || ||||  ||||| ||||| ||||| |||||| | || |||||    | ||| | ||||||||  ||       
1301777 catctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctcg 1301876  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| || || ||||| |||||||| ||||||||  | |||| | ||||||||||||||||||||||||||  ||||   ||||||||||| ||||| ||     
1301877 catcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacgggtttgtcattcacaccggcg 1301976  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaa 285  Q
    || |||||||| ||||||||||  || |||||||||||||| |  |||||||| ||||||||||||||    
1301977 atgaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaa 1302044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 8654763 - 8655031
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| ||||| |||||||||||||| || || || || || || ||||| |||||  ||||||| || |||||| | |  || |||||||||| |||       
8654763 catctatggttgcttttcgctgagagtcattgaagtatgccggcacagtaacaacgacatttttgacgggtgatccaaggtatgcctctgcaatctctcg 8654862  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||||| || ||   |||||| |||||||| |||||||   ||||||| ||||| |||||||||||| ||||| | ||||||||||||||||||| |    
8654863 catctttgtaagaaccgcagatgatatttcctcagcacaaaattgcttctcttgacctttgtacttaacagtaatcatgggtttgtcattaacaccagaa 8654962  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
     ||||| |||| ||||||||||  ||||| ||||||||||  || |||||| | |||||||||||||||    
8654963 gtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaattaac 8655031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 17268252 - 17268518
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| |||||||||||||||||||||||||| || ||||| || ||||| |  || |||||  |||||| |||||| | |||  |||| |||| ||||      
17268252 catctatggtggcttttcgctgagaatcgttgaagtaagccgggacagtaatgacagcattcataaccgatgattctagatattcctcagcaatctcccg 17268351  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| |||||||| || ||||| || |||||||| ||||||| | | |||||| | ||||||||||| |    |||| | ||||||||||| | | | |||    
17268352 catctttgtgagtaccatagacgaaatttcctctgcacaaaagtgtttctcccgtcccttgtacttgagggaaatcattggtttgtcattcatatccgca 17268451  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaatta 284  Q
    || |||||||| |||||| ||| |||||||||||| || || || |||||||| |||||||||||||    
17268452 atgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaatta 17268518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 17260554 - 17260817
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||| | |||  ||||  |||||| |||||| | |||  |||| |||| ||||      
17260554 catctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacattaataaccgatgattcaagatatacctcagcaatctcccg 17260653  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||    || || ||||| ||||||||||| ||||||| | | |||||| | ||||||||||| |    |||| | ||||||||||| | | | |||    
17260654 catcttcacaagtaccatagacgagatttcctctgcacaaaagtgtttctcccgtcccttgtacttgagggaaatcattggtttgtcattcatatccgca 17260753  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaa 281  Q
    || |||||||| |||||| ||| |||||||||||| || || || |||||||| ||||||||||    
17260754 atgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaa 17260817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 286
Target Start/End: Original strand, 8545968 - 8546213
Alignment:
41 gaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatg 140  Q
    ||||| |||||||||||||| ||||| |  |||||||| ||||| ||||| |||||| | |||||||||| |||   ||| | || |||||  | |||||    
8545968 gaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatg 8546067  T
141 agatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacag 240  Q
    | ||||| || |||  || | |||| |||| ||||||||| || |||  ||| || ||||||||||||||||| | ||| ||||| || |||||||||||    
8546068 atatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaagaattgtcggtttgtcattaacaccggaaatgaccttaaagggccacaacag 8546167  T
241 tatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    || ||| || ||||||| ||  |||||| ||||||| |||||||||    
8546168 tagatcattctgaacaaaggaatcactatatttccttccaattaac 8546213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 6789833 - 6790093
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    |||||||| || |||||||| || ||||||||||| ||||| | |||||||||||| | |  ||| | ||||||   ||| |||| ||||  ||| || |    
6789833 gtggctttccgttgagaatcattgaaataagcaggcacagtaataactgcattttttatctctgactgcaaatatttctcagcaatctcccgcatcttgg 6789932  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    ||||||  ||||| || | ||||||  |||| ||  ||||||||| |||||| |||| ||||  |||| | || |||||||| || |||||||| |||||    
6789933 tgaggatcatagacgaaacttcctcaacacatagttgcttctcctcacccttatactcaacaacaatcatgggcttgtcattgacgccagcaatgacctt 6790032  T
226 gaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||| ||||| ||||  ||||| ||||||||||| |  |||||||| |||||||||||||||    
6790033 gaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaac 6790093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 286
Target Start/End: Original strand, 3147596 - 3147853
Alignment:
29 gcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtga 128  Q
    ||||| ||||||| ||| || ||||||||||| || || ||||||||||| || || ||  |||| ||| |  ||||||||  ||    ||| ||||| |    
3147596 gctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattcttgacaggcaattctaaaaactcctctgcagtcttgcgcatctttgtta 3147695  T
129 ggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaa 228  Q
    | || |||||||||||||| || ||||| ||| |||||||||| |||||| |||||||   |||| | ||||||||||| || ||   ||| ||||||||    
3147696 gaaccatagatgagatttcttcagcacataggtgcttctcctgtcccttgcacttaaccgaaatcatgggtttgtcattcactccgcaaatgaccttgaa 3147795  T
229 cggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
     ||||||||||  ||||| ||||||||||| |  |||| ||| |||||||||||||||    
3147796 tggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaac 3147853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 7877580 - 7877360
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    ||||||||||| |||||||| || |||||||| || ||||| ||||||||||| || || ||||| |||||| |   |||||||| |||   ||| ||||    
7877580 gtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattcttgacaggtgactccaaaaacttctctgcaatctcgcgcatctttg 7877481  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    | ||||  || ||||| |||||||||||||||| | |||| ||||  ||||| ||||||||| | ||   ||| ||||||| |  |||||||| ||||||    
7877480 taaggatcatggatgatatttcctcggcacaaaagtgcttttcctcgcccttatacttaacaatgatatcaggcttgtcatcagaaccagcaacaacctt 7877381  T
226 gaacggccacaacagtatatc 246  Q
     || ||||||||||| |||||    
7877380 aaatggccacaacagaatatc 7877360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 8602295 - 8602555
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    |||||||||||||||||||| ||||||||||| || ||||| ||||||||||| || || ||||| |||| | |   ||||||||  ||   ||| ||||    
8602295 gtggcttttcgctgagaatcattaaaataagccggcacagtaacaactgcattcttgacaggtgactccagaaacttctctgcaatttcacgcatctttg 8602394  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    | ||||| || |||||||||||||| ||||| | | |||| |||  |||||| ||||||||| | |||  ||||||||||| |   |||| || ||||||    
8602395 taaggaccattgatgagatttcctcagcacagaagtgcttttccccacccttatacttaacaatgatctcaggtttgtcatcattgccaggaacaacctt 8602494  T
226 gaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
     || ||||||||| |||| || || ||||  || |  |||||| ||||||| |||||||||    
8602495 aaatggccacaaccgtatgtcattctgaatgacagaatcactatatttccttccaattaac 8602555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 27830722 - 27830490
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    ||||||||||| ||||| || || |||||||| || || || |  |||||||| ||||||||||||| |||||| ||||| || | |||   ||| ||||    
27830722 gtggcttttcgttgagagtcattgaaataagctggcacggttattactgcattcttaaccggtgattgcaaatatgcctccgcgatctctcgcatctttg 27830623  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    | ||||| || ||||| |||||||| ||||| | | | |||||||||| |||||||||||||  || | | |||||||  || ||| ||| ||| || ||    
27830622 taaggaccattgatgaaatttcctccgcacataagtgtttctcctgactcttgtacttaacaacaaacatgggtttgttgtttacatcagtaatgacttt 27830523  T
226 gaacggccacaacagtatatctttttgaacaac 258  Q
    |||  |||||||   ||||||||||||||||||    
27830522 gaatagccacaagtttatatctttttgaacaac 27830490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 8590957 - 8591120
Alignment:
24 tggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtt 123  Q
    |||| ||||| | ||||||||| ||||||||||| || ||||| ||||||||||| || || ||||| |||||| |    || |||| |||   ||| ||    
8590957 tggtagctttcctctgagaatcattaaaataagctggcacagtaacaactgcattcttgacaggtgactccaaaaacttttcagcaatctctcgcatctt 8591056  T
124 tgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaaca 187  Q
    |||||| || || |||||||||||||| ||||||||  |||| |||| ||||||||||||||||    
8591057 tgtgagaaccatggatgagatttcctccgcacaaagacgcttttcctcacccttgtacttaaca 8591120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 8640285 - 8640164
Alignment:
134 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 233  Q
    |||||||| ||||||||||||||||   ||||||| | ||||||||| |||||| ||||||| ||||||||||| || |   |||| |||||||| ||||    
8640285 atagatgatatttcctcggcacaaaaacgcttctcttcacccttgtatttaacaataatcgtgggtttgtcattcaccc---caatgaccttgaatggcc 8640189  T
234 acaacagtatatctttttgaacaac 258  Q
    |||||   ||||| |||||||||||    
8640188 acaacttcatatcattttgaacaac 8640164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 8582021 - 8582281
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    |||||| |||| || ||||| |||||||||||||| ||||| |  |||||||| ||||| ||||| |||||| | |||||||||| |||   ||| | ||    
8582021 gtggctcttcgttgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtg 8582120  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    | || | || |||||| ||||| || |||  || | | || |||| ||||||||| || |||   || || |||||||||||| |||| ||  | |||||    
8582121 tcagaataacagatgatatttcttcagcaagaaagtgtttttccttacccttgtagttcacaacgattgtcggtttgtcattagcacctgcggtgacctt 8582220  T
226 gaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||| |||||||||   ||||| |||||||||| ||  |||||| ||||||| |||||||||    
8582221 gaagggccacaacttgatatccttttgaacaatggaatcactatatttccttccaattaac 8582281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 286
Target Start/End: Complemental strand, 29577518 - 29577256
Alignment:
24 tggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtt 123  Q
    |||||||||||||||||||||| || |||||||| || || ||||  |||||||| || || ||| | |||||| |   |||||||| ||||| ||| ||    
29577518 tggtggcttttcgctgagaatcattgaaataagctggcactgtgatcactgcattctttacgggtaactccaaaaatttctctgcaatctcctgcatctt 29577419  T
124 tgtgaggacaatagatgagatttcctcggc-acaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataac 222  Q
    || |||||  ||||| || |||||||| || |||||| | |||||| |  |||||||||||||||   ||| | || ||||||| | | |||| ||| ||    
29577418 tgagaggatcatagacgatatttcctcagcaacaaagca-cttctctttgcccttgtacttaacaaggatcttgggattgtcatcagctccaggaatgac 29577320  T
223 cttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||| || |||||||||  |||||||||  ||| || ||  ||||| |||||||| |||||||||    
29577319 cttaaagggccacaactttatatctttccgaataatggaatcactgaatttccttccaattaac 29577256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 8382723 - 8382562
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    |||||||| || |||||||| || ||||| ||||| || || |||||| |||| |  |  ||||| |||||| ||  |||||||| |||   ||| |||     
8382723 gtggctttccgttgagaatcattgaaatatgcaggcacggtaacaactacattctcgataggtgactccaaaaaattctctgcaatctcacgcatctttt 8382624  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaaca 187  Q
    ||||||| ||||| ||||||||||||||||||||| | || |||| |||||| |||||||||    
8382623 tgaggaccatagaggagatttcctcggcacaaaggtgtttttcctcacccttatacttaaca 8382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 8610238 - 8610297
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaacc 85  Q
    |||||||| ||||||||||| |||||||||||||| |||||||  ||||||| |||||||    
8610238 gtggctttccgctgagaatcattaaaataagcaggcacagtgatcactgcatctttaacc 8610297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 8647198 - 8647407
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    ||||||||||||||| |||| || || || ||||| ||||| ||||||||||| || || || ||    |||||   ||||||||||||   ||| ||||    
8647198 gtggcttttcgctgataatcattgaagtatgcaggcacagtaacaactgcattctttacaggggacattaaatatttctctgcaacctctcgcatctttg 8647297  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    ||||||  || ||||| |||||||| ||||||    ||||||| | ||||||||| |||||| ||||| | ||||||||||| || |   |||| |||||    
8647298 tgaggatcatcgatgatatttcctcagcacaataacgcttctcttcacccttgtatttaacaataatcatgggtttgtcattcaccc---caatgacctt 8647394  T
226 gaacggccacaac 238  Q
    ||| |||||||||    
8647395 gaatggccacaac 8647407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 8636192 - 8635980
Alignment:
24 tggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtt 123  Q
    |||||| ||| ||||||||||| || |||||||| || ||||| |  |||||||| || || | |||||||| ||| ||||| |||| |||   ||| ||    
8636192 tggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattcttgacagatgattccagatatgcctcagcaatctctcgcatctt 8636093  T
124 tgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacc 223  Q
    ||| ||||| ||||| || |||||||| | | ||||  |||| |  | ||||||||| || |||  |||| | |||||||||| |  ||||||||| |||    
8636092 tgtcaggaccatagacgatatttcctcaggaaaaagttgcttttgttcacccttgtatttcacaacaatcatgggtttgtcatcacgaccagcaattacc 8635993  T
224 ttgaacggccaca 236  Q
    || || |||||||    
8635992 ttaaagggccaca 8635980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 29581690 - 29581654
Alignment:
24 tggtggcttttcgctgagaatcgttaaaataagcagg 60  Q
    |||||||||||||||||||||| || |||||||||||    
29581690 tggtggcttttcgctgagaatcattgaaataagcagg 29581654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 30775565 - 30775833
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    ||||||| |||||||||||||| | ||| || ||||||||||| ||||||| ||||||||||||||| || |||||||||||   |||||||| |||  |    
30775565 catccatagtggcttttcgctgtgcatcattgaaataagcaggcacagtgataactgcatttttaactggggattccaaatacatctctgcaatctctct 30775664  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||||||||||| || ||||| |||||||||||||| ||||| |||||||| |||||| ||||||    |||| | ||||||||||||||||||| |    
30775665 catatttgtgaggactattgatgaaatttcctcggcacagaggagtttctcctggcccttgaacttaagggaaatcatgggtttgtcattaacaccagaa 30775764  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    | ||||||||| ||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||||    
30775765 acaaccttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaac 30775833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 9335746 - 9335479
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| |||||||| |||||||||||||| || || ||||| || || || ||||| ||||| || ||||| ||  ||||||| ||||| ||||||||  |    
9335746 catctatggtggcctttcgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggcgaccccaaatatgcctccgcaacctctct 9335647  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||||| || |  ||||| || |||||||| ||||||| | ||||||| ||||||||||| |||||| ||||| ||||||||||||||||||||| |    
9335646 catctttgtaagcaacatagaagatatttcctcagcacaaaagtgcttctcttgacccttgtagttaacagtaatcataggtttgtcattaacaccagaa 9335547  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaa 285  Q
    ||||||||||| |||||||||| ||||||| ||||||||||  | |||||||| ||||||||| ||||    
9335546 ataaccttgaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccagttaa 9335479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 35132769 - 35133027
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    ||||||||||| ||||||||  ||||||||||||| ||||| ||||||||||| ||||| | |||||| ||||| ||||  ||||  ||   ||| ||||    
35132769 gtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattcttaacagttgattctaaatatgcct--gcaatttctcgcatctttg 35132866  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    |||| || || ||||| | ||| || ||| | ||  |||| |||| | |||||||||||||  ||||| | ||||||||||| ||||| ||| | |||||    
35132867 tgagtaccatggatgatacttcttccgcatagagttgcttttcctcatccttgtacttaaccgtaatcatgggtttgtcatttacaccggcagtgacctt 35132966  T
226 gaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    ||| ||||| | ||||||||| | ||||||||  || |||||||| |||||||||||||||    
35132967 gaatggccatagcagtatatcatcttgaacaataggatcactaaacttcctaccaattaac 35133027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 29 - 286
Target Start/End: Complemental strand, 34466637 - 34466380
Alignment:
29 gcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtga 128  Q
    ||||||||||||||||| |||||||||||||| || |||| ||||||||| ||||  ||||||||||||||  ||||||||   |||  ||| ||||  |    
34466637 gcttttcgctgagaatcattaaaataagcaggcacggtgataactgcattcttaattggtgattccaaatattcctctgcagtatcccgcatctttgaaa 34466538  T
129 ggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaa 228  Q
    |||  ||||||||||||||||| ||||| ||| |||||||||||||||| |||||||    |||| | || ||||||||||||||||||||||| |||||    
34466537 ggatcatagatgagatttcctcagcacataggtgcttctcctgacccttatacttaagggaaatcattggcttgtcattaacaccagcaataactttgaa 34466438  T
229 cggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
     ||||| ||||  |||||| |||||||| | || ||||||||||| || |||||||||    
34466437 tggccataacatcatatctgtttgaacatcaggatcactaaattttctgccaattaac 34466380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 15595362 - 15595588
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    ||||||||||| |||||||| || | ||||||||| || || ||||||||||| || || || || |  ||||    ||||||||||||   ||| |||     
15595362 gtggcttttcgttgagaatcattgagataagcaggcacggtaacaactgcattgtttacgggagactaaaaattt--ctctgcaacctctcgcatctttt 15595459  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    |||| |  ||||| || |||||||| ||||||| | |||| || ||||||||||| |||||| ||||| | ||||||||||| ||||   |||| |||||    
15595460 tgagaatcatagacgatatttcctcagcacaaaagcgcttttcttgacccttgtatttaacaataatcatgggtttgtcattcacac---caatgacctt 15595556  T
226 gaacggccacaacagtatatctttttgaacaa 257  Q
    ||| |||||||||  |||||| ||||||||||    
15595557 gaatggccacaactttatatcattttgaacaa 15595588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 4678269 - 4678145
Alignment:
162 gcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggg 261  Q
    ||||||| |||||||||||||||||||||||| | ||||| |||||  ||||||  || ||| | || ||||||||||  || |||||||||||||| |     
4678269 gcttctcttgacccttgtacttaacactaatcatcggtttatcattctcaccagtgatgaccctaaatggccacaacatgatgtctttttgaacaacaga 4678170  T
262 gtcactaaatttcctaccaattaac 286  Q
     |||||| |  ||||||||||||||    
4678169 atcactatacctcctaccaattaac 4678145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 28220264 - 28220532
Alignment:
18 catccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctcctt 117  Q
    |||| ||||||||||| |||||| |||| || ||||||||||| ||||| | ||||||||| || || ||  |||||||| | |||||||||| |||       
28220264 catctatggtggctttccgctgataatcattgaaataagcaggcacagtaataactgcattcttgacaggaaattccaaaaaggcctctgcaatctcacg 28220363  T
118 catgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagca 217  Q
    ||| ||||| || || |||||||||||||| |||||||| ||| |||||||||| |||||||||||||||  |||| | |||||||| ||    || | |    
28220364 catctttgttagaaccatagatgagatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcatgggtttgtcgttcgttccggaa 28220463  T
218 ataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    || |||||||| |||||||||  |||||| | ||||||||| | ||||||||| |||||||||||||||    
28220464 atgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaac 28220532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 43745168 - 43745428
Alignment:
26 gtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttg 125  Q
    |||||||| |||||| |||| || |||||||| || ||||| ||||||||||| || || ||  ||| |||| | | |||||||| |||   ||| ||||    
43745168 gtggctttccgctgataatcattgaaataagccggcacagtaacaactgcattcttgacaggcaattgcaaaaatgtctctgcaatctcacgcatctttg 43745267  T
126 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataacctt 225  Q
    | || |  |||||||||||||| |||||||| ||| |||||||||| |||||||||||||||  ||||   ||||||||||| |  || | ||| |||||    
43745268 ttagaatcatagatgagatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgacctt 43745367  T
226 gaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 286  Q
    |||||||||||||   ||||| ||||||||| | |  ||| |||| |||||||||||||||    
43745368 gaacggccacaacttcatatcattttgaacatcagaatcattaaacttcctaccaattaac 43745428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 28911013 - 28911161
Alignment:
136 agatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccac 235  Q
    ||||||||||||||| ||||| |    |||||||||| |||||||||| |||   ||| | || |||||||| ||||| ||||| |||||||||||| ||    
28911013 agatgagatttcctcagcacataatttcttctcctgatccttgtacttgacagatatcatggggttgtcattgacaccggcaatgaccttgaacggcgac 28911112  T
236 aacagtatatctttttgaacaacggggtcactaaatttcctaccaatta 284  Q
    |||| |  ||| |||||||||||||| |||||||| |||||| ||||||    
28911113 aacattgaatcgttttgaacaacgggatcactaaacttcctatcaatta 28911161  T

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