View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7996_low_22 (Length: 310)

Name: NF7996_low_22
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7996_low_22
NF7996_low_22
[»] chr2 (1 HSPs)
chr2 (13-310)||(9086344-9086641)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 9086344 - 9086641
Alignment:
Q  13 aatatcttcaaaattatgatgaaaaagtggcaccaaatccatatataaagaccgatatcactcttctgctttaaagaaaaaactgcatctttgatttcta 112  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9086344 aatatcttcaaaattatgatgaaaaagtgccaccaaatccatatataaagaccaatatcactcttctgctttaaagaaaaaactgcatctttgatttcta 9086443  T
Q  113 caaatgaaggcttaggtaagtttagcatttttcattttagtcaccatagttggaatagaatctaccactattattcatagctctgacattaggggtagca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9086444 caaatgaaggcttaggtaagtttagcatttttcattttagtcaccatagttggaatagaatctaccactattattcatagccctgacattaggggtagca 9086543  T
Q  213 aaaatgtcagataaatgctatggacatgtctcaatgtcttcaggatgctgcaagatgttatcagcatgtctaagcatatatagtcatttgtttagaag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9086544 aaaatgtcagataaatgctatggacatgtctcaatgtcttcaggatgctgcaagatgttatcagcatgtctaagcatatatagtcatttgtttagaag 9086641  T

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