View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_23 (Length: 308)
Name: NF7996_low_23
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_23 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 81 - 308
Target Start/End: Original strand, 42324876 - 42325103
Alignment:
| Q |
81 |
ggcatttttcaaccattaaaatacctaccaaatgtagcatctgttgttccaggaatatctgtcacaatcctgtattaaataaatacaacagaatttaatc |
180 |
Q |
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| T |
42324876 |
ggcatttttcaaccattaaaatacctaccaaatgtagcatctgttgttccaggaatatctgtcacaatcctgtattaaataaatacaacagaatttaatc |
42324975 |
T |
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| Q |
181 |
aaacaaaataactggttaatttctagatatatggtactatatctcattatatattatatttaccagtgcaagtgttctcttagataaggatcactggggc |
280 |
Q |
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| T |
42324976 |
aaacaaaataactggttaatttctagatatatggtactatatctcattatatattatatttaccagtgcaagtgttctcttagataaggatcactagggc |
42325075 |
T |
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| Q |
281 |
caggaacatcagggtctgtcatcaccta |
308 |
Q |
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| T |
42325076 |
caggaacatcagggtctgtcatcaccta |
42325103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 42324804 - 42324848
Alignment:
| Q |
19 |
ctgtgtgttttacaatttcaatatgtcattatattctctctcatc |
63 |
Q |
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| T |
42324804 |
ctgtgtgtgatacaatttcaatatgtcattatattctctctcatc |
42324848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 26206116 - 26206165
Alignment:
| Q |
241 |
taccagtgcaagtgttctcttagataaggatcactggggccaggaacatc |
290 |
Q |
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| T |
26206116 |
taccagtgtaagtgttctttcatataaggatcacttgggccaggaacatc |
26206165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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