View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7996_low_26 (Length: 285)

Name: NF7996_low_26
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7996_low_26
NF7996_low_26
[»] chr8 (4 HSPs)
chr8 (57-285)||(27513835-27514061)
chr8 (81-227)||(8674890-8675040)
chr8 (1-47)||(27513761-27513807)
chr8 (4-47)||(8675102-8675145)
[»] chr1 (4 HSPs)
chr1 (179-285)||(39209805-39209911)
chr1 (16-152)||(39209906-39210040)
chr1 (81-224)||(24037047-24037194)
chr1 (5-46)||(24036937-24036978)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 57 - 285
Target Start/End: Original strand, 27513835 - 27514061
Alignment:
Q  57 tcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtt 156  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||    
T  27513835 tcaaaacaacaacagccattcagtgagagagag--aacctcttcaccgagctcgatagctctttcaatagtagcatcgtgagctttcgacttagcatgtt 27513932  T
Q  157 tctaaaacttcttttgaagagtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtc 256  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||  ||| | ||||    
T  27513933 tctaaaacttcttctgacgagtttagcatgaatttcagatcgtttttctttgttcttactcatcggaggacggagcggttccttcattctggtcttcgtc 27514032  T
Q  257 tctgttctggttttttctgcggttcctct 285  Q
    ||  |||||||||||||||||||||||||    
T  27514033 tcctttctggttttttctgcggttcctct 27514061  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 8675040 - 8674890
Alignment:
Q  81 gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga 176  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||| || |||||||| ||||| | || |||||| |||     ||    
T  8675040 gagagagagtgaacctcttcaccgagctcgatagctcttttaacagcagcatcacgagcattagacttagcgcgtttttcaagcttcttctgatgcttga 8674941  T
Q  177 gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggac 227  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  8674940 gtttagcatgaatttcagatcgtttttctttgttcttaatcattgaaggac 8674890  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27513761 - 27513807
Alignment:
Q  1 aaggtcttcggcaccttcttctctggaagctacaacaacacagaaat 47  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  27513761 aaggtcttcggcaccttcttctctggaagctacgacaacacagaaat 27513807  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 8675145 - 8675102
Alignment:
Q  4 gtcttcggcaccttcttctctggaagctacaacaacacagaaat 47  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  8675145 gtcttcggcaccttcttctccggaggctacaacaacacagaaat 8675102  T

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Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 39209911 - 39209805
Alignment:
Q  179 ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtctctgttctggttttttctgcgg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39209911 ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacggagcagttccttcatttcggtttccgtcactgttctggttttttctgcgg 39209812  T
Q  279 ttcctct 285  Q
    |||||||    
T  39209811 ttcctct 39209805  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 39210040 - 39209906
Alignment:
Q  16 ttcttctctggaagctacaacaacacagaaatnnnnnnnnntcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagc 115  Q
    ||||||| ||||||||||||||||||||||||         |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  39210040 ttcttctatggaagctacaacaacacagaaataaaaaaa--tcaaaacaacaacatccattcagtgagagagagtgaacctcttcaccgagctcgatagc 39209943  T
Q  116 tctttcaataacagcatcgcgagctttcgacttagca 152  Q
    |||||||||| ||||||||||||||||||||||||||    
T  39209942 tctttcaatagcagcatcgcgagctttcgacttagca 39209906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 24037047 - 24037194
Alignment:
Q  81 gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga 176  Q
    ||||||||| ||||||||||||||| ||||||||| |||| || | || ||||||||||||||||||||||  |||||| || |||||| |||     ||    
T  24037047 gagagagagcgaacctcttcaccgatctcgatagcgcttttaacagcaacatcgcgagctttcgacttagcgtgtttctcaagcttcttctgacgcttga 24037146  T
Q  177 gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaag 224  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||    
T  24037147 gtttagcatgaatttcagatcgttttccttttttcttaatcatcgaag 24037194  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 24036937 - 24036978
Alignment:
Q  5 tcttcggcaccttcttctctggaagctacaacaacacagaaa 46  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||    
T  24036937 tcttcggcagctttttctccggaagctacaacaacacagaaa 24036978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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