View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7996_low_27 (Length: 282)

Name: NF7996_low_27
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7996_low_27
NF7996_low_27
[»] chr7 (17 HSPs)
chr7 (16-137)||(14699621-14699743)
chr7 (232-282)||(21188394-21188444)
chr7 (238-282)||(46863312-46863356)
chr7 (207-282)||(34139901-34139976)
chr7 (205-250)||(46738804-46738849)
chr7 (205-250)||(46908499-46908544)
chr7 (238-282)||(30355207-30355251)
chr7 (136-183)||(17834420-17834467)
chr7 (137-183)||(39173195-39173241)
chr7 (205-250)||(7071-7116)
chr7 (205-250)||(12210616-12210661)
chr7 (205-250)||(17840916-17840961)
chr7 (205-250)||(27657040-27657085)
chr7 (138-187)||(36185646-36185695)
chr7 (205-250)||(42583086-42583131)
chr7 (238-282)||(36394906-36394950)
chr7 (238-282)||(40587722-40587766)
[»] chr6 (14 HSPs)
chr6 (18-112)||(8551584-8551678)
chr6 (205-282)||(29061298-29061375)
chr6 (199-246)||(11840280-11840327)
chr6 (232-278)||(32034364-32034410)
chr6 (205-250)||(2109519-2109564)
chr6 (199-250)||(6760898-6760949)
chr6 (205-248)||(25554707-25554750)
chr6 (137-187)||(3502727-3502777)
chr6 (205-247)||(29076352-29076394)
chr6 (205-247)||(29109885-29109927)
chr6 (205-247)||(29111325-29111367)
chr6 (205-250)||(14012401-14012446)
chr6 (133-182)||(26349905-26349954)
chr6 (135-187)||(11687982-11688034)
[»] chr5 (20 HSPs)
chr5 (5-126)||(41642871-41642993)
chr5 (18-127)||(4154667-4154777)
chr5 (137-248)||(43093941-43094053)
chr5 (205-250)||(3891485-3891530)
chr5 (205-250)||(7757327-7757372)
chr5 (205-250)||(8539542-8539587)
chr5 (205-250)||(31788137-31788182)
chr5 (205-250)||(43094602-43094647)
chr5 (136-184)||(25877554-25877602)
chr5 (235-282)||(42865772-42865819)
chr5 (204-250)||(5200382-5200428)
chr5 (137-183)||(8680336-8680382)
chr5 (200-250)||(11346004-11346054)
chr5 (205-250)||(14689-14734)
chr5 (205-246)||(7762274-7762315)
chr5 (205-250)||(11348501-11348546)
chr5 (238-279)||(18307315-18307356)
chr5 (238-278)||(542762-542802)
chr5 (238-282)||(20192414-20192458)
chr5 (138-182)||(28388614-28388658)
[»] chr4 (34 HSPs)
chr4 (205-282)||(34530763-34530840)
chr4 (205-282)||(39588094-39588171)
chr4 (195-250)||(46254474-46254529)
chr4 (232-282)||(34154396-34154446)
chr4 (137-187)||(39588025-39588075)
chr4 (205-250)||(14200563-14200608)
chr4 (205-250)||(16984187-16984232)
chr4 (205-250)||(21022914-21022959)
chr4 (205-250)||(23220680-23220725)
chr4 (137-182)||(37880661-37880706)
chr4 (205-250)||(38369208-38369253)
chr4 (205-250)||(40833636-40833681)
chr4 (205-250)||(49889685-49889730)
chr4 (205-282)||(56304878-56304955)
chr4 (137-182)||(56566645-56566690)
chr4 (238-282)||(56138313-56138357)
chr4 (138-250)||(44674099-44674211)
chr4 (232-282)||(6283435-6283485)
chr4 (137-183)||(28320492-28320538)
chr4 (232-282)||(51429297-51429347)
chr4 (205-250)||(7485687-7485732)
chr4 (138-187)||(16983456-16983505)
chr4 (205-250)||(16983524-16983569)
chr4 (205-250)||(28081460-28081505)
chr4 (138-187)||(37015865-37015914)
chr4 (205-250)||(39590594-39590639)
chr4 (205-250)||(51037494-51037539)
chr4 (138-187)||(51492006-51492055)
chr4 (207-248)||(51492075-51492116)
chr4 (238-282)||(958562-958606)
chr4 (138-182)||(28235655-28235699)
chr4 (238-282)||(29700270-29700314)
chr4 (138-182)||(37880598-37880642)
chr4 (238-282)||(44561298-44561342)
[»] chr8 (22 HSPs)
chr8 (205-282)||(22547471-22547548)
chr8 (204-250)||(32584053-32584099)
chr8 (156-250)||(39601656-39601751)
chr8 (138-248)||(39939243-39939354)
chr8 (205-250)||(5533051-5533096)
chr8 (205-250)||(22550891-22550936)
chr8 (205-250)||(28617570-28617615)
chr8 (205-250)||(38604274-38604319)
chr8 (205-250)||(44933861-44933906)
chr8 (238-282)||(26451541-26451585)
chr8 (236-282)||(18441409-18441455)
chr8 (205-247)||(34235152-34235194)
chr8 (137-183)||(34503152-34503198)
chr8 (205-250)||(2335174-2335219)
chr8 (205-250)||(27501602-27501647)
chr8 (138-187)||(34234517-34234566)
chr8 (138-187)||(43262359-43262408)
chr8 (138-187)||(44052316-44052365)
chr8 (205-250)||(44841900-44841945)
chr8 (238-282)||(41274653-41274697)
chr8 (238-282)||(41858091-41858135)
chr8 (138-182)||(45409806-45409850)
[»] scaffold0854 (1 HSPs)
scaffold0854 (18-129)||(1014-1126)
[»] chr1 (31 HSPs)
chr1 (18-127)||(4229173-4229283)
chr1 (205-254)||(48228324-48228373)
chr1 (205-277)||(49426715-49426787)
chr1 (232-282)||(14174879-14174929)
chr1 (232-282)||(27487634-27487684)
chr1 (205-250)||(586631-586676)
chr1 (205-250)||(4883235-4883280)
chr1 (134-187)||(15354648-15354701)
chr1 (205-250)||(19161894-19161939)
chr1 (205-250)||(30194423-30194468)
chr1 (205-282)||(44596863-44596940)
chr1 (141-182)||(45976841-45976882)
chr1 (238-282)||(29709279-29709323)
chr1 (238-282)||(29763187-29763231)
chr1 (238-282)||(42572725-42572769)
chr1 (238-282)||(49395664-49395708)
chr1 (136-183)||(9618654-9618701)
chr1 (135-182)||(31779960-31780007)
chr1 (138-177)||(31783816-31783855)
chr1 (137-187)||(26944412-26944462)
chr1 (133-183)||(49874937-49874987)
chr1 (205-250)||(19914468-19914513)
chr1 (138-187)||(20114539-20114588)
chr1 (205-250)||(29765555-29765600)
chr1 (138-187)||(32161382-32161431)
chr1 (205-250)||(51271617-51271662)
chr1 (135-187)||(94341-94393)
chr1 (138-182)||(14985273-14985317)
chr1 (135-179)||(18609992-18610036)
chr1 (135-187)||(46886477-46886529)
chr1 (238-282)||(49927469-49927513)
[»] scaffold0011 (1 HSPs)
scaffold0011 (136-182)||(235865-235911)
[»] chr3 (39 HSPs)
chr3 (238-282)||(41803059-41803103)
chr3 (205-250)||(2271339-2271384)
chr3 (205-250)||(11249550-11249595)
chr3 (205-250)||(12897826-12897871)
chr3 (205-250)||(14043924-14043969)
chr3 (205-250)||(27739593-27739638)
chr3 (205-250)||(34543162-34543207)
chr3 (205-250)||(55385139-55385184)
chr3 (138-182)||(4015223-4015267)
chr3 (138-182)||(14398469-14398513)
chr3 (238-282)||(24703383-24703427)
chr3 (238-282)||(34694402-34694446)
chr3 (238-282)||(43476253-43476297)
chr3 (238-282)||(45101816-45101860)
chr3 (205-253)||(50998703-50998751)
chr3 (238-282)||(55207631-55207675)
chr3 (235-282)||(19454319-19454366)
chr3 (204-250)||(4004829-4004875)
chr3 (204-246)||(10492028-10492070)
chr3 (136-182)||(36812768-36812814)
chr3 (205-246)||(2062388-2062429)
chr3 (137-182)||(4331914-4331959)
chr3 (137-182)||(8475760-8475805)
chr3 (205-250)||(16647173-16647218)
chr3 (205-250)||(19750044-19750089)
chr3 (205-250)||(19988461-19988506)
chr3 (205-250)||(20350620-20350665)
chr3 (205-250)||(24703441-24703486)
chr3 (205-250)||(28817027-28817072)
chr3 (138-187)||(43476125-43476174)
chr3 (205-250)||(43478856-43478901)
chr3 (138-187)||(43478920-43478969)
chr3 (138-187)||(46989481-46989530)
chr3 (238-282)||(13896844-13896888)
chr3 (138-182)||(14403065-14403109)
chr3 (138-182)||(42166504-42166548)
chr3 (238-282)||(51402366-51402410)
chr3 (238-282)||(51696542-51696586)
chr3 (238-282)||(55385198-55385242)
[»] scaffold0176 (1 HSPs)
scaffold0176 (207-282)||(826-901)
[»] chr2 (20 HSPs)
chr2 (204-250)||(10425845-10425891)
chr2 (236-282)||(29093796-29093842)
chr2 (205-250)||(3943218-3943263)
chr2 (205-250)||(7189977-7190022)
chr2 (205-250)||(28477093-28477138)
chr2 (205-250)||(30803044-30803089)
chr2 (205-250)||(36510882-36510927)
chr2 (238-282)||(2920484-2920528)
chr2 (238-282)||(24512228-24512272)
chr2 (205-252)||(3086038-3086085)
chr2 (205-250)||(10424841-10424886)
chr2 (138-187)||(23346715-23346764)
chr2 (205-250)||(23347354-23347399)
chr2 (137-182)||(24754126-24754171)
chr2 (138-187)||(39377635-39377684)
chr2 (137-182)||(41273342-41273387)
chr2 (238-282)||(10365760-10365804)
chr2 (136-184)||(25184922-25184970)
chr2 (238-282)||(41500202-41500246)
chr2 (238-282)||(43491170-43491214)
[»] scaffold0199 (1 HSPs)
scaffold0199 (205-250)||(12414-12459)
[»] scaffold0340 (1 HSPs)
scaffold0340 (138-182)||(19163-19207)
[»] scaffold0016 (1 HSPs)
scaffold0016 (205-253)||(69244-69292)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 14699621 - 14699743
Alignment:
Q  16 agagagtgtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcatatggtgttggtattgtctctaaaattttgtgt-ta 114  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| ||    
T  14699621 agagagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtcta 14699720  T
Q  115 gttatctttcctcttaattaaat 137  Q
    |||||| |||||| ||| |||||    
T  14699721 gttatcattcctcataaataaat 14699743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 21188444 - 21188394
Alignment:
Q  232 ggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  21188444 ggctgcagttaactgccgaggatcttctgctacaaatctggcagaagctct 21188394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 46863356 - 46863312
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  46863356 agttaactgccgaagatcttctgctacaaatctggcagaagctct 46863312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 34139901 - 34139976
Alignment:
Q  207 ttaactgacgaagttttagaaatttggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||| |||||  ||||||||  ||||||||||||||||||| ||||||   ||| ||||||||||||||||||    
T  34139901 ttaactgccgaagaattagaaatccggctgcagttaactgccgaggatcttcctctacaaatctggcagaagctct 34139976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 46738804 - 46738849
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  46738804 agttaactgccgaagttttagaaatccggctgcagttaactgccga 46738849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 46908544 - 46908499
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  46908544 agttaactgtcgaagttttagaaatacggctgcagttaactgccga 46908499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 30355251 - 30355207
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  30355251 agttaactgccgaggatcttctgctacaaatctggcagaagctct 30355207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 17834420 - 17834467
Alignment:
Q  136 atgagaattgttgtttacagattacataaggatgtgtcacacgagtaa 183  Q
    |||||||||| |||||||| ||||||||||| |||| |||||||||||    
T  17834420 atgagaattgatgtttacacattacataaggctgtgccacacgagtaa 17834467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 39173241 - 39173195
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagtaa 183  Q
    |||||||||||||| ||||||| ||||||| |||||||||| |||||    
T  39173241 tgagaattgttgttgacagattgcataaggctgtgtcacactagtaa 39173195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 7071 - 7116
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||  |||||||||||||||  |||||||||||||||||||    
T  7071 agttaactaccgaagttttagaaatacggctgcagttaactgccga 7116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 12210661 - 12210616
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  ||| |||||||||||||||    
T  12210661 agttaactgccgaagttttagaaatacggccgcagttaactgccga 12210616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 17840961 - 17840916
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  | |||||||||||||||||    
T  17840961 agttaactgccgaagttttagaaatccgactgcagttaactgccga 17840916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 27657040 - 27657085
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| | |||||||||||||  |||||||||||||||||||    
T  27657040 agttaactgccaaagttttagaaatacggctgcagttaactgccga 27657085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 36185695 - 36185646
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||| ||||| || ||||||||||| |||| |||||||||||||||    
T  36185695 gagaattgctgtttccacattacataaggctgtgccacacgagtaaatga 36185646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 42583131 - 42583086
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||||||||  ||||||||||||||  |||||||||||||||||||    
T  42583131 agttaactgtagaagttttagaaatacggctgcagttaactgccga 42583086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 36394950 - 36394906
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||||| |||| |||||| ||||| ||||||||||||||||||    
T  36394950 agttaactaccgaggatcttctgctacaaatctggcagaagctct 36394906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 40587722 - 40587766
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||    
T  40587722 agttaactgccgaggatcttatgctataaatctgaaagaagctct 40587766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 8551678 - 8551584
Alignment:
Q  18 agagtgtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcatatggtgttggtattgtctctaaaattttgtgt 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  8551678 agagagtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgt 8551584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 29061298 - 29061375
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| ||| |  ||||||||| |||||||||||||| |||| |||||| ||||| |||||||| |||||||||    
T  29061298 agttaactgccgaggaattagaaattcggctgcagttaacttccgaggatcttctgctacaaatctggtagaagctct 29061375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 11840327 - 11840280
Alignment:
Q  199 cttgatagttaactgacgaagttttagaaatttggctgcagttaactg 246  Q
    |||| |||||||||| |||||||||||||||| |||||||||||||||    
T  11840327 cttggtagttaactgccgaagttttagaaattcggctgcagttaactg 11840280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 32034410 - 32034364
Alignment:
Q  232 ggctgcagttaactgccgaagatcttttgctataaatctggcagaag 278  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||||||    
T  32034410 ggctgcagttaactgccgatgatcttctgctacaaatctggcagaag 32034364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 2109519 - 2109564
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  2109519 agttaactgccgaagttttagaaatacggctgcagttaactgccga 2109564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 6760949 - 6760898
Alignment:
Q  199 cttgatagttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||| |||||||||| |||||||||||||||  |||||||||||| ||||||    
T  6760949 cttggtagttaactgccgaagttttagaaatacggctgcagttaattgccga 6760898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 25554707 - 25554750
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgcc 248  Q
    ||||||||| |||||||||||||||  |||||||||||||||||    
T  25554707 agttaactgccgaagttttagaaatacggctgcagttaactgcc 25554750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 3502777 - 3502727
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    ||||||||| | |||||| ||| ||||||| ||||||||||||||||||||    
T  3502777 tgagaattgctatttacacatttcataaggttgtgtcacacgagtaaatga 3502727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 29076394 - 29076352
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgc 247  Q
    ||||||||| |||||||||||||||  ||||||||||||||||    
T  29076394 agttaactgtcgaagttttagaaatccggctgcagttaactgc 29076352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 29109927 - 29109885
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgc 247  Q
    ||||||||| |||||||||||||||  ||||||||||||||||    
T  29109927 agttaactgtcgaagttttagaaatccggctgcagttaactgc 29109885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 29111367 - 29111325
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgc 247  Q
    ||||||||| |||||||||||||||  ||||||||||||||||    
T  29111367 agttaactgtcgaagttttagaaatccggctgcagttaactgc 29111325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 14012446 - 14012401
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  14012446 agttaactgccgaagttttagaaatccggcttcagttaactgccga 14012401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 26349905 - 26349954
Alignment:
Q  133 taaatgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||| |||||||||| |||||| ||| ||||||| |||||||||||||||    
T  26349905 taaaggagaattgttatttacatattgcataaggttgtgtcacacgagta 26349954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 11688034 - 11687982
Alignment:
Q  135 aatgagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    ||||||||||| ||||  || ||||||||||| |||| |||||||||||||||    
T  11688034 aatgagaattgctgttcccacattacataaggctgtgccacacgagtaaatga 11687982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 41642993 - 41642871
Alignment:
Q  5 gagagagaagaagagagtgtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcatatggtgttggtattgtctctaaaa 104  Q
    |||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||   ||| ||||| |||||| |||||||    
T  41642993 gagagaaaagaagagagtgtgtgtattggctttaccaaactgccattgatttgaggttgaaataacaaaattgtccatgatgttgatattgtgtctaaaa 41642894  T
Q  105 ttttgtgt-tagttatctttcct 126  Q
    |||||||| |||||||| |||||    
T  41642893 ttttgtgtctagttatcattcct 41642871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 4154667 - 4154777
Alignment:
Q  18 agagtgtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcatatggtgttggtattgtctctaaaattttgtgt-tagt 116  Q
    |||| ||| ||||||||||||| || |||||||| | || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  4154667 agagggtgcgtagtggttttacaaagctgcccttaacttaaggttgaaataacaaaattgcctatggtgttggtattgtgtctaaaattttgtgtctagt 4154766  T
Q  117 tatctttcctc 127  Q
    |||| ||||||    
T  4154767 tatcattcctc 4154777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 43093941 - 43094053
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagtaaatgannnnnnnatctctt-gatagttaactgacgaagttttagaaatttggct 235  Q
    |||||||||||||||||| |||  |||||| ||||||||||||||||||||       | | |||  | ||||||||| |||| ||||||||||  ||||    
T  43093941 tgagaattgttgtttacatatttgataaggctgtgtcacacgagtaaatgacgtttttaccccttcaacagttaactgccgaaattttagaaatccggct 43094040  T
Q  236 gcagttaactgcc 248  Q
    |||||||||||||    
T  43094041 gcagttaactgcc 43094053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 3891485 - 3891530
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  3891485 agttaactgccgaagttttagaaatacggctgcagttaactgccga 3891530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 7757327 - 7757372
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  7757327 agttaactgccgaagttttagaaatccggctgcagttaactgccga 7757372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 8539587 - 8539542
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  8539587 agttaactgccgaagttttagaaatccggctgcagttaactgccga 8539542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 31788182 - 31788137
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||| | |||||||||||||||||    
T  31788182 agttaactgtcgaagttttagaaattagactgcagttaactgccga 31788137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 43094647 - 43094602
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  43094647 agttaactgccgaagttttagaaatccggctgcagttaactgccga 43094602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 25877554 - 25877602
Alignment:
Q  136 atgagaattgttgtttacagattacataaggatgtgtcacacgagtaaa 184  Q
    ||||||||||||||| ||| ||| ||||||| |||||||||||||||||    
T  25877554 atgagaattgttgttgacacattgcataaggttgtgtcacacgagtaaa 25877602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 42865819 - 42865772
Alignment:
Q  235 tgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| |||||| |||||| ||||| ||||||||||||||||||    
T  42865819 tgcagttaattgccgaggatcttctgctacaaatctggcagaagctct 42865772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 5200428 - 5200382
Alignment:
Q  204 tagttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||||||||| |||||||||||||| | |||||||||||||| ||||    
T  5200428 tagttaactgtcgaagttttagaaaatcggctgcagttaactcccga 5200382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 8680382 - 8680336
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagtaa 183  Q
    |||||||||||||| ||| ||| ||||||| ||||||||||||||||    
T  8680382 tgagaattgttgttgacacattgcataaggctgtgtcacacgagtaa 8680336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 11346004 - 11346054
Alignment:
Q  200 ttgatagttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||| ||||||||| |||||||||||||||   ||||||||||||||||||    
T  11346004 ttgacagttaactgccgaagttttagaaatccagctgcagttaactgccga 11346054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 14734 - 14689
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  ||||| |||||||||||||    
T  14734 agttaactgccgaagttttagaaatacggctgtagttaactgccga 14689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 7762315 - 7762274
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactg 246  Q
    ||||||||| |||||||||||||||| || ||||||||||||    
T  7762315 agttaactgccgaagttttagaaattcggttgcagttaactg 7762274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 11348546 - 11348501
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  || ||||||||||||||||    
T  11348546 agttaactgccgaagttttagaaatccggatgcagttaactgccga 11348501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 18307315 - 18307356
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagc 279  Q
    ||||||||||||| |||||| ||||| |||||||||||||||    
T  18307315 agttaactgccgaggatcttctgctacaaatctggcagaagc 18307356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 542802 - 542762
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaag 278  Q
    ||||||||||||| |||||| ||||| ||||||||||||||    
T  542802 agttaactgccgaggatcttctgctacaaatctggcagaag 542762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 20192414 - 20192458
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||||    
T  20192414 agttaaatgccgaggatcttctgctacaaatctggcagaagctct 20192458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 28388658 - 28388614
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||||||||||||  |||||||||| |||| ||||||||||    
T  28388658 gagaattgttgtttacactttacataaggctgtgccacacgagta 28388614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 34530840 - 34530763
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||| |||| |||||||||||||    
T  34530840 agttaactgtcgaagttttagaaatctggctgcagttaactgccgaggatcttctgctacaaatttggcagaagctct 34530763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 39588094 - 39588171
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| ||| |  ||||||||| | ||||||||||||||||| |||||| ||||| |||| |||||||||||||    
T  39588094 agttaactgccgaggaattagaaattcgactgcagttaactgccgaggatcttctgctacaaatatggcagaagctct 39588171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 46254529 - 46254474
Alignment:
Q  195 atctcttgatagttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||||| | |||||||||| |||||||||||||||  |||||||||||||||||||    
T  46254529 atctctcggtagttaactgccgaagttttagaaatacggctgcagttaactgccga 46254474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 34154446 - 34154396
Alignment:
Q  232 ggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||||||||||||| || |||||| ||||| ||||||||||||||||||    
T  34154446 ggctgcagttaactgcagaggatcttctgctacaaatctggcagaagctct 34154396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 39588025 - 39588075
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    ||||||||||||||  || ||| ||||||||||||||||||||||||||||    
T  39588025 tgagaattgttgttctcatattgcataaggatgtgtcacacgagtaaatga 39588075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 14200563 - 14200608
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  14200563 agttaactgtcgaagttttagaaatacggctgcagttaactgccga 14200608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 16984232 - 16984187
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  16984232 agttaactgccgaagttttagaaatccggctgcagttaactgccga 16984187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 21022959 - 21022914
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  21022959 agttaactgccgaagttttagaaatacggctgcagttaactgccga 21022914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 23220680 - 23220725
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  23220680 agttaactgccgaagttttagaaatacggctgcagttaactgccga 23220725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 37880706 - 37880661
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||    
T  37880706 tgagaattgttgtttacacattacataaggctgtgccacacgagta 37880661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 38369253 - 38369208
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  38369253 agttaactgccgaagttttagaaatacggctgcagttaactgccga 38369208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 40833681 - 40833636
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  40833681 agttaactgccgaagttttagaaatacggctgcagttaactgccga 40833636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 49889685 - 49889730
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  49889685 agttaactgtcgaagttttagaaatctggttgcagttaactgccga 49889730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 56304878 - 56304955
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| ||| |  ||| |||| ||||||||||||| |||||| ||| || ||||| ||||||||||||||||||    
T  56304878 agttaactgtcgaggaattaaaaatctggctgcagttaattgccgaggattttctgctacaaatctggcagaagctct 56304955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 56566690 - 56566645
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||    
T  56566690 tgagaattgttgtttacacgttacataaggctgtgtcacacgagta 56566645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 56138313 - 56138357
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  56138313 agttaactgccgaggatcttctgctacaaatctggcagaagctct 56138357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 44674099 - 44674211
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatgannnnnnnatctcttgatagttaactgacgaagttttagaaatttggctgc 237  Q
    |||||||||||||  || ||||||||||| |||| |||||||||||||||         | ||||  ||||||||| |||||||| |||||   ||||||    
T  44674099 gagaattgttgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgccccttggcagttaactgccgaagtttaagaaacccggctgc 44674198  T
Q  238 agttaactgccga 250  Q
    |||||||||||||    
T  44674199 agttaactgccga 44674211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 6283485 - 6283435
Alignment:
Q  232 ggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||||||||| |||||| ||||  ||||||||| ||||||||    
T  6283485 ggctgcagttaactgccgaggatcttctgcttcaaatctggccgaagctct 6283435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 28320492 - 28320538
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagtaa 183  Q
    |||||||||||||| ||| ||| ||||||| ||||||||||||||||    
T  28320492 tgagaattgttgttgacacattgcataaggttgtgtcacacgagtaa 28320538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 51429347 - 51429297
Alignment:
Q  232 ggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||||| ||| |||||| ||||| |||||||| |||||||||    
T  51429347 ggctgcagttaactgtcgaggatcttctgctacaaatctggaagaagctct 51429297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 7485732 - 7485687
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  ||||||| |||||||||||    
T  7485732 agttaactgtcgaagttttagaaatacggctgcaattaactgccga 7485687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 16983456 - 16983505
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    ||||||||||||||||| |||  |||||| |||| |||||||||||||||    
T  16983456 gagaattgttgtttacacatttgataaggctgtgccacacgagtaaatga 16983505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 16983524 - 16983569
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  16983524 agttaactgccgaagttttagaaatccggctacagttaactgccga 16983569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 28081460 - 28081505
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  | |||||||||||||||||    
T  28081460 agttaactgccgaagttttagaaatccgactgcagttaactgccga 28081505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 37015865 - 37015914
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||  || |||||||||||||||| |||| ||||||||||    
T  37015865 gagaattgttgttcccacattacataaggatgtgccacatgagtaaatga 37015914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 39590639 - 39590594
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||   ||||||||||||||||||    
T  39590639 agttaactgccgaagttttagaaatacagctgcagttaactgccga 39590594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 51037539 - 51037494
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  ||||||| |||||||||||    
T  51037539 agttaactgccgaagttttagaaatacggctgcaattaactgccga 51037494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 51492006 - 51492055
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||  || ||||||||||| |||| |||||||||||||||    
T  51492006 gagaattgttgttcccacattacataaggttgtgccacacgagtaaatga 51492055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 51492075 - 51492116
Alignment:
Q  207 ttaactgacgaagttttagaaatttggctgcagttaactgcc 248  Q
    ||||||| |||||||||||||||  |||||||||||||||||    
T  51492075 ttaactgtcgaagttttagaaatccggctgcagttaactgcc 51492116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 958606 - 958562
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||| ||||||||||||    
T  958606 agttaactgccgaggatcttctgctacaaatccggcagaagctct 958562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 28235699 - 28235655
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    ||||||||||||||||| ||||||||||| |||  ||||||||||    
T  28235699 gagaattgttgtttacacattacataaggctgtaccacacgagta 28235655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 29700314 - 29700270
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||||    
T  29700314 agttaattgccgatgatcttctgctacaaatctggcagaagctct 29700270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 37880598 - 37880642
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||| |||||||| ||||||||||| |||| ||||||||||    
T  37880598 gagaattgctgtttacacattacataaggctgtgccacacgagta 37880642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 44561342 - 44561298
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||| | ||||| ||||||||||||||||||    
T  44561342 agttaactgccgaggatcgtctgctacaaatctggcagaagctct 44561298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 22547471 - 22547548
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| |||||||||||||||  |||||||||||||| |||| |||||| | ||| ||||||||||||||||||    
T  22547471 agttaactgccgaagttttagaaatccggctgcagttaactaccgaggatcttctactacaaatctggcagaagctct 22547548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 32584053 - 32584099
Alignment:
Q  204 tagttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||    
T  32584053 tagttaactgtcgaagttttagaaatacggctgcagttaactgccga 32584099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 39601656 - 39601751
Alignment:
Q  156 attacataaggatgtgtcacacgagtaaatgannnnnnnatct-cttgatagttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||||| |||| |||||||||||||||       | || || || ||||||||| |||||||||||||||  |||||||||||||||||||    
T  39601656 attacataaggctgtgccacacgagtaaatgacgtttttaccttctcgacagttaactgccgaagttttagaaatccggctgcagttaactgccga 39601751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 39939354 - 39939243
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga-nnnnnnnatctcttgatagttaactgacgaagttttagaaatttggctg 236  Q
    ||||||| |||||  || ||||||||||||||||||||||||||||||||         || || || |||||| || |||||||||||||||  |||||    
T  39939354 gagaattattgttcccacattacataaggatgtgtcacacgagtaaatgacgtttttgctccctcgacagttaattgtcgaagttttagaaatccggctg 39939255  T
Q  237 cagttaactgcc 248  Q
    ||||||||||||    
T  39939254 cagttaactgcc 39939243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 5533096 - 5533051
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  5533096 agttaactgccgaagttttagaaatacggctgcagttaactgccga 5533051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 22550936 - 22550891
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  22550936 agttaactgccgaagttttagaaatccggctgcagttaactgccga 22550891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 28617570 - 28617615
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  28617570 agttaactgccgaagttttagaaatacggctgcagttaactgccga 28617615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 38604319 - 38604274
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  38604319 agttaactgccgaagttttagaaatacggctgcagttaactgccga 38604274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 44933861 - 44933906
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  44933861 agttaactgccgaagttttagaaatacggctgcagttaactgccga 44933906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 26451541 - 26451585
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  26451541 agttaactgccgaggatcttctgctacaaatctggcagaagctct 26451585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 18441455 - 18441409
Alignment:
Q  236 gcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||||| |||||| ||||| ||||||||||||| ||||    
T  18441455 gcagttaactgccgaggatcttctgctacaaatctggcagaaactct 18441409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 34235194 - 34235152
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgc 247  Q
    ||||||||| |||||||||||||||| |||| |||||||||||    
T  34235194 agttaactgccgaagttttagaaattcggctacagttaactgc 34235152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 34503198 - 34503152
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagtaa 183  Q
    |||||||||||||| ||| ||| ||||||| ||||||||||||||||    
T  34503198 tgagaattgttgttgacacattgcataagggtgtgtcacacgagtaa 34503152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 2335219 - 2335174
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||  |||||||||||||||  |||||||||||||||||||    
T  2335219 agttaactaccgaagttttagaaatacggctgcagttaactgccga 2335174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 27501602 - 27501647
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||  |||||||||||||||  |||||||||||||||||||    
T  27501602 agttaactaccgaagttttagaaatacggctgcagttaactgccga 27501647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 34234517 - 34234566
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    ||||||||||||||||| |||  |||||| |||| |||||||||||||||    
T  34234517 gagaattgttgtttacacatttgataaggctgtgccacacgagtaaatga 34234566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 43262359 - 43262408
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||  || ||||||||||| |||| |||||||||||||||    
T  43262359 gagaattgttgttctcacattacataaggctgtgccacacgagtaaatga 43262408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 44052365 - 44052316
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||  || ||||||||||| |||| |||||||||||||||    
T  44052365 gagaattgttgttcccacattacataaggttgtggcacacgagtaaatga 44052316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 44841945 - 44841900
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  || ||||||||||||||||    
T  44841945 agttaactgccgaagttttagaaatacggttgcagttaactgccga 44841900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 41274653 - 41274697
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||||||||||  ||||| | ||||||||||||||||||||||    
T  41274653 agttaactgccgagaatcttctactataaatctggcagaagctct 41274697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 41858135 - 41858091
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| ||| |||||| ||||| ||||||||||||||||||    
T  41858135 agttaactgtcgaggatcttctgctacaaatctggcagaagctct 41858091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 45409806 - 45409850
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||| |||||||| ||||||||||| |||| ||||||||||    
T  45409806 gagaattgctgtttacacattacataaggctgtgccacacgagta 45409850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 1126 - 1014
Alignment:
Q  18 agagtgtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcatatggtgttggtattgtctctaaaattttgtgt-tagt 116  Q
    |||| ||||||||||||||||| || |||||||| | || |||||||||| ||||||  ||  ||||||||| |||||| ||||||||||||||| || |    
T  1126 agagggtgtgtagtggttttacaaagctgcccttaacttaaggttgaaatgacaaaaaagcccatggtgttgatattgtgtctaaaattttgtgtctaat 1027  T
Q  117 tatctttcctctt 129  Q
    |||| ||||||||    
T  1026 tatcattcctctt 1014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 4229283 - 4229173
Alignment:
Q  18 agagtgtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcatatggtgttggtattgtctctaaaattttgtgt-tagt 116  Q
    |||| ||||||| ||||||||| || |||||||| | || |||||||||| ||||||  ||  |||||||||||||||| ||||||||||||| | ||||    
T  4229283 agagggtgtgtattggttttacaaagctgcccttaacttaaggttgaaatgacaaaaaagcccatggtgttggtattgtgtctaaaattttgtatctagt 4229184  T
Q  117 tatctttcctc 127  Q
    |||| ||||||    
T  4229183 tatcattcctc 4229173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 48228373 - 48228324
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaagat 254  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  48228373 agttaactgccgaagttttagaaatctggctgcagttaactgccgaagat 48228324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 49426715 - 49426787
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaagatcttttgctataaatctggcagaa 277  Q
    ||||||| | |||||||||||||||  ||||||| ||||||||||| |||||| ||||| |||||||||||||    
T  49426715 agttaaccgccgaagttttagaaatccggctgcaattaactgccgaggatcttctgctacaaatctggcagaa 49426787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 14174929 - 14174879
Alignment:
Q  232 ggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  14174929 ggctgcagttaactgccgaggatcttctgctaaaaatctggcagaagctct 14174879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 27487684 - 27487634
Alignment:
Q  232 ggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  27487684 ggctgcagttaactgccgaggatcttctgctacaaatctggcagaagctct 27487634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 586676 - 586631
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  586676 agttaactgccgaagttttagaaatacggctgcagttaactgccga 586631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 4883235 - 4883280
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  4883235 agttaactgccgaagttttagaaatacggctgcagttaactgccga 4883280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 15354701 - 15354648
Alignment:
Q  134 aaatgagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||| ||||  || ||||||||||| ||||||||||||||||||||    
T  15354701 aaatgagaattgctgttcccacattacataaggttgtgtcacacgagtaaatga 15354648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 19161894 - 19161939
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  19161894 agttaactgccgaagttttagaaatccggctgcagttaactgccga 19161939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 30194423 - 30194468
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  30194423 agttaactgccgaagttttagaaatacggctgcagttaactgccga 30194468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 44596863 - 44596940
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| |||||||||||||||  || ||||||||||||| ||  ||||| ||||| |||| |||||||| ||||    
T  44596863 agttaactgccgaagttttagaaatccggttgcagttaactgctgagtatcttctgctacaaatttggcagaaactct 44596940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 45976841 - 45976882
Alignment:
Q  141 aattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  45976841 aattgttgtttacacgttacataaggatgtgtcacacgagta 45976882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 29709323 - 29709279
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| | ||||||||||||||||||||| |||||||||||    
T  29709323 agttaactgtcaaagatcttttgctataaatctagcagaagctct 29709279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 29763231 - 29763187
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  29763231 agttaactgccgaggatcttctgctacaaatctggcagaagctct 29763187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 42572769 - 42572725
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  42572769 agttaactgccgaggatcttctgctacaaatctggcagaagctct 42572725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 49395664 - 49395708
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  49395664 agttaactgccgaggatcttctgctacaaatctggcagaagctct 49395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 9618654 - 9618701
Alignment:
Q  136 atgagaattgttgtttacagattacataaggatgtgtcacacgagtaa 183  Q
    ||||||||||||||| ||| ||| ||||||| ||||||||||||||||    
T  9618654 atgagaattgttgttgacacattgcataaggctgtgtcacacgagtaa 9618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 31779960 - 31780007
Alignment:
Q  135 aatgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||||||||||||||| ||||||||||| |||| |||| |||||    
T  31779960 aatgagaattgttgtttacacattacataaggctgtgccacatgagta 31780007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 31783855 - 31783816
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacac 177  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  31783855 gagaattgttgtttacacattacataaggttgtgtcacac 31783816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 26944412 - 26944462
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    ||||||||||||||  || ||||||||||| |||| |||||||||||||||    
T  26944412 tgagaattgttgttcccacattacataaggctgtgccacacgagtaaatga 26944462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 49874937 - 49874987
Alignment:
Q  133 taaatgagaattgttgtttacagattacataaggatgtgtcacacgagtaa 183  Q
    |||| ||||||||||||| ||| ||| ||||||| ||||||||||||||||    
T  49874937 taaaagagaattgttgttgacacattgcataaggttgtgtcacacgagtaa 49874987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 19914468 - 19914513
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||  |||||||||||||||  |||||||||||||||||||    
T  19914468 agttaacttccgaagttttagaaatacggctgcagttaactgccga 19914513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 20114539 - 20114588
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||  || ||||||||||| |||| |||||||||||||||    
T  20114539 gagaattgttgttcccacattacataaggctgtgccacacgagtaaatga 20114588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 29765600 - 29765555
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  || ||||||||||||||||    
T  29765600 agttaactgccgaagttttagaaatccggttgcagttaactgccga 29765555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 32161431 - 32161382
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||  || ||||||||||| |||| |||||||||||||||    
T  32161431 gagaattgttgttcccacattacataaggctgtgccacacgagtaaatga 32161382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 51271662 - 51271617
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||| ||||||    
T  51271662 agttaactgccgaagttttagaaatccggctgcagttaattgccga 51271617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 94341 - 94393
Alignment:
Q  135 aatgagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||||||||| |||  |||||| |||| |||| ||||||||||    
T  94341 aatgagaattgttgtttacacatttgataaggctgtgccacatgagtaaatga 94393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 14985273 - 14985317
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||| |||||||| ||||||||||| |||||||||| ||||    
T  14985273 gagaattgctgtttacacattacataaggctgtgtcacactagta 14985317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 18610036 - 18609992
Alignment:
Q  135 aatgagaattgttgtttacagattacataaggatgtgtcacacga 179  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||    
T  18610036 aatgagaattgttgtttacacatttgataaggctgtgtcacacga 18609992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 46886529 - 46886477
Alignment:
Q  135 aatgagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||||||||| |||  |||||| ||||  ||||||||||||||    
T  46886529 aatgagaattgttgtttacacatttgataaggttgtgctacacgagtaaatga 46886477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 49927513 - 49927469
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||||| |||| |||||| ||||| ||||||||||||||||||    
T  49927513 agttaactaccgaggatcttctgctacaaatctggcagaagctct 49927469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 235865 - 235911
Alignment:
Q  136 atgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  235865 atgagaattgttgtttacacattacataaggctgtgtcacacgagta 235911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 41803059 - 41803103
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  41803059 agttaactgccgaggatcttttgctacaaatctggcagaagctct 41803103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 2271384 - 2271339
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  2271384 agttaactgtcgaagttttagaaatccggctgcagttaactgccga 2271339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 11249595 - 11249550
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||    
T  11249595 agttaactgctgaagttttagaaatatggctgcagttaactgccga 11249550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 12897826 - 12897871
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  12897826 agttaactgccgaagttttagaaatacggctgcagttaactgccga 12897871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 14043969 - 14043924
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||    
T  14043969 agttaactgtcgaagttttagaaaatcggctgcagttaactgccga 14043924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 27739638 - 27739593
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  27739638 agttaactgccgaagttttagaaatacggctgcagttaactgccga 27739593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 34543207 - 34543162
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  34543207 agttaactgccgaagttttagaaatacggctgcagttaactgccga 34543162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 55385139 - 55385184
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  55385139 agttaactgccgaagttttagaaatccggctgcagttaactgccga 55385184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 4015267 - 4015223
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||    
T  4015267 gagaattgctgtttacacattacataaggctgtgtcacacgagta 4015223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 14398469 - 14398513
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||||||||||||  |||||||||| |||||||||||||||    
T  14398469 gagaattgttgtttacactttacataaggctgtgtcacacgagta 14398513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 24703427 - 24703383
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  24703427 agttaactgccgatgatcttctgctacaaatctggcagaagctct 24703383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 34694446 - 34694402
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  34694446 agttaactgccgaggatcttctgctacaaatctggcagaagctct 34694402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 43476253 - 43476297
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||    
T  43476253 agttaactgccgaggatcttttgctacaaatctgacagaagctct 43476297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 45101860 - 45101816
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  45101860 agttaactgccgaggatcttctgctacaaatctggcagaagctct 45101816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 50998751 - 50998703
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaaga 253  Q
    ||||||||| |||||||||| ||||  ||||||||||||||||||||||    
T  50998751 agttaactgccgaagttttataaatccggctgcagttaactgccgaaga 50998703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 55207675 - 55207631
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  55207675 agttaactgccgaggatcttctgctacaaatctggcagaagctct 55207631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 19454366 - 19454319
Alignment:
Q  235 tgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||||||||||||| |||||| | ||| ||||||||||||||||||    
T  19454366 tgcagttaactgccgaggatcttctactacaaatctggcagaagctct 19454319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 4004875 - 4004829
Alignment:
Q  204 tagttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||| || |||||||||||||||  |||||||||||||||||||    
T  4004875 tagttaattgccgaagttttagaaatccggctgcagttaactgccga 4004829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 10492028 - 10492070
Alignment:
Q  204 tagttaactgacgaagttttagaaatttggctgcagttaactg 246  Q
    |||||||||| |||||||||||||||  |||||||||||||||    
T  10492028 tagttaactgtcgaagttttagaaatacggctgcagttaactg 10492070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 36812768 - 36812814
Alignment:
Q  136 atgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||||| ||||||||  ||||||||||||||| ||||||||||    
T  36812768 atgagaattgctgtttacactttacataaggatgtgccacacgagta 36812814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 2062388 - 2062429
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactg 246  Q
    ||||||||| ||||||||||||||  ||||||||||||||||    
T  2062388 agttaactgccgaagttttagaaaactggctgcagttaactg 2062429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 4331959 - 4331914
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    ||||||||| |||||||| ||||||||||| |||| ||||||||||    
T  4331959 tgagaattgctgtttacacattacataaggctgtgccacacgagta 4331914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 8475760 - 8475805
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    ||||||||| |||||||| ||||||||||| |||| ||||||||||    
T  8475760 tgagaattgctgtttacatattacataaggttgtgccacacgagta 8475805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 16647218 - 16647173
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| ||| |||||||||||  |||||||||||||||||||    
T  16647218 agttaactgccgatgttttagaaatccggctgcagttaactgccga 16647173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 19750044 - 19750089
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||| ||||||||||  |||||||||||||||||||    
T  19750044 agttaactgccgaaattttagaaatacggctgcagttaactgccga 19750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 19988461 - 19988506
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||| ||||||||    
T  19988461 agttaactgccgaagttttagaaatacggctgcagttgactgccga 19988506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 20350620 - 20350665
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||||| || |||||||||||||| |||||||||||||||| ||||    
T  20350620 agttaattgtcgaagttttagaaaattggctgcagttaactaccga 20350665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 24703486 - 24703441
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||  |||||||||||||||| || ||||||||||||||||    
T  24703486 agttaactaccgaagttttagaaattcggatgcagttaactgccga 24703441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 28817072 - 28817027
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| | |||||||||||||  |||||||||||||||||||    
T  28817072 agttaactgccaaagttttagaaatacggctgcagttaactgccga 28817027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 43476125 - 43476174
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||  || ||||||||||| |||| |||||||||||||||    
T  43476125 gagaattgttgttctcacattacataaggttgtgccacacgagtaaatga 43476174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 43478901 - 43478856
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||||||||  ||||||||||||||  |||||||||||||||||||    
T  43478901 agttaactgctgaagttttagaaatccggctgcagttaactgccga 43478856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 43478969 - 43478920
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||||||||  || ||||||||||| |||| |||||||||||||||    
T  43478969 gagaattgttgttcccacattacataaggttgtgccacacgagtaaatga 43478920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 46989481 - 46989530
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    ||||||||||||||||| |||  |||||| ||||||| ||||||||||||    
T  46989481 gagaattgttgtttacacatttaataaggttgtgtcatacgagtaaatga 46989530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 13896888 - 13896844
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||||||| || | ||| ||||||||||||||||||    
T  13896888 agttaactgccgaagattttctactacaaatctggcagaagctct 13896844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 14403109 - 14403065
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||||||||||||  |||||||||| |||| ||||||||||    
T  14403109 gagaattgttgtttacactttacataaggctgtgccacacgagta 14403065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 42166548 - 42166504
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||| |||||||| ||||||||||| |||| ||||||||||    
T  42166548 gagaattgatgtttacacattacataaggttgtgccacacgagta 42166504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 51402410 - 51402366
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||| ||||||||||    
T  51402410 agttaactgccgaggatcttctgctacaaatctgtcagaagctct 51402366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 51696586 - 51696542
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||  ||||||||||||||||||    
T  51696586 agttaactgccgaggatcttctgctgcaaatctggcagaagctct 51696542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 55385198 - 55385242
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||| ||| |||||| ||||| ||||||||||||||||||    
T  55385198 agttaactgtcgaggatcttctgctacaaatctggcagaagctct 55385242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 826 - 901
Alignment:
Q  207 ttaactgacgaagttttagaaatttggctgcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||| |||||  ||||||||  ||||||||||||||||||| ||||||   ||| ||||||||||||||||||    
T  826 ttaactgccgaagaattagaaatccggctgcagttaactgccgaggatcttcctctacaaatctggcagaagctct 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 10425891 - 10425845
Alignment:
Q  204 tagttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||    
T  10425891 tagttaactgtcgaagttttagaaatacggctgcagttaactgccga 10425845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 29093842 - 29093796
Alignment:
Q  236 gcagttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  29093842 gcagttaactgccgaggatcttctgctacaaatctggcagaagctct 29093796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 3943263 - 3943218
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  3943263 agttaactgccgaagttttagaaatccggctgcagttaactgccga 3943218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 7190022 - 7189977
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  7190022 agttaactgccgaagttttagaaatccggctgcagttaactgccga 7189977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 28477138 - 28477093
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  28477138 agttaactgccgaagttttagaaatacggctgcagttaactgccga 28477093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 30803089 - 30803044
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  30803089 agttaactgccgaagttttagaaatacggctgcagttaactgccga 30803044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 36510927 - 36510882
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  36510927 agttaactgccgaagttttagaaatacggctgcagttaactgccga 36510882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 2920528 - 2920484
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  2920528 agttaactgccgaggatcttctgctacaaatctggcagaagctct 2920484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 24512228 - 24512272
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  24512228 agttaactgccgaggatcttctgctacaaatctggcagaagctct 24512272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 3086038 - 3086085
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaag 252  Q
    ||||||||| |||||||||||||||  ||||| |||||||||||||||    
T  3086038 agttaactgccgaagttttagaaatacggctgtagttaactgccgaag 3086085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 10424841 - 10424886
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  10424841 agttaactgccgaagttttagaaatacggctacagttaactgccga 10424886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 23346715 - 23346764
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    ||||||||||||||||| |||  |||||| |||| |||||||||||||||    
T  23346715 gagaattgttgtttacacatttgataaggttgtgccacacgagtaaatga 23346764  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 23347399 - 23347354
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||| ||||    
T  23347399 agttaactgccgaagttttagaaatccggctgcagttaactaccga 23347354  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 24754171 - 24754126
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    ||||||||| ||||||||  |||||||||| |||||||||||||||    
T  24754171 tgagaattgctgtttacactttacataaggctgtgtcacacgagta 24754126  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 39377635 - 39377684
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagtaaatga 187  Q
    |||||||| ||||| || ||||||||||| |||| |||||||||||||||    
T  39377635 gagaattgctgtttccacattacataaggctgtgccacacgagtaaatga 39377684  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 41273387 - 41273342
Alignment:
Q  137 tgagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||||||||||||| |||||||| || |||| ||||||||||    
T  41273387 tgagaattgttgtttacacattacatatggctgtgccacacgagta 41273342  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 10365804 - 10365760
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||| |||||| |||||||||||| |||||||||| |||||||    
T  10365804 agttaaatgccgaggatcttttgctacaaatctggcataagctct 10365760  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 25184970 - 25184922
Alignment:
Q  136 atgagaattgttgtttacagattacataaggatgtgtcacacgagtaaa 184  Q
    ||||||||||||||| ||||||| ||||||| || | ||||||||||||    
T  25184970 atgagaattgttgttgacagattgcataaggttgaggcacacgagtaaa 25184922  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 41500246 - 41500202
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    ||||||||||||| |||||| ||||| |||||||||| |||||||    
T  41500246 agttaactgccgaggatcttctgctacaaatctggcataagctct 41500202  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 43491170 - 43491214
Alignment:
Q  238 agttaactgccgaagatcttttgctataaatctggcagaagctct 282  Q
    |||||||||||||  ||||| || |||||||||||||||||||||    
T  43491170 agttaactgccgagaatcttctgttataaatctggcagaagctct 43491214  T

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Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 12459 - 12414
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccga 250  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  12459 agttaactgccgaagttttagaaatccggctgcagttaactgccga 12414  T

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Target: scaffold0340 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 19163 - 19207
Alignment:
Q  138 gagaattgttgtttacagattacataaggatgtgtcacacgagta 182  Q
    |||||||||||||||||  |||||||||| |||| ||||||||||    
T  19163 gagaattgttgtttacactttacataaggctgtgccacacgagta 19207  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 69292 - 69244
Alignment:
Q  205 agttaactgacgaagttttagaaatttggctgcagttaactgccgaaga 253  Q
    ||||||||| |||||||||||||||  || |||||||||||| ||||||    
T  69292 agttaactgccgaagttttagaaatacggatgcagttaactgtcgaaga 69244  T

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