View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7996_low_29 (Length: 271)

Name: NF7996_low_29
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7996_low_29
NF7996_low_29
[»] chr2 (2 HSPs)
chr2 (1-134)||(29350707-29350841)
chr2 (179-257)||(29350829-29350907)
[»] chr8 (5 HSPs)
chr8 (178-257)||(4030364-4030443)
chr8 (132-182)||(4031577-4031627)
chr8 (132-190)||(12195684-12195742)
chr8 (132-190)||(12440112-12440170)
chr8 (133-193)||(15349244-15349304)
[»] chr3 (3 HSPs)
chr3 (132-257)||(11015067-11015192)
chr3 (133-257)||(11024079-11024203)
chr3 (133-221)||(11005540-11005628)
[»] chr4 (26 HSPs)
chr4 (132-199)||(49038512-49038579)
chr4 (132-193)||(45371714-45371775)
chr4 (132-257)||(49043744-49043869)
chr4 (133-209)||(7790441-7790517)
chr4 (133-257)||(48870921-48871045)
chr4 (133-257)||(48876225-48876349)
chr4 (132-193)||(7878743-7878804)
chr4 (132-209)||(48147337-48147414)
chr4 (132-193)||(48853041-48853102)
chr4 (132-193)||(48864395-48864456)
chr4 (133-193)||(7908663-7908723)
chr4 (133-257)||(48886607-48886731)
chr4 (133-193)||(7786825-7786885)
chr4 (132-190)||(48156072-48156130)
chr4 (133-191)||(50666676-50666734)
chr4 (137-190)||(7237386-7237439)
chr4 (132-193)||(7773465-7773526)
chr4 (142-191)||(37826632-37826681)
chr4 (132-257)||(45365796-45365921)
chr4 (132-193)||(45384532-45384593)
chr4 (133-193)||(7766003-7766063)
chr4 (137-193)||(7771760-7771816)
chr4 (133-193)||(7813838-7813898)
chr4 (133-199)||(48903316-48903382)
chr4 (136-193)||(50669446-50669503)
chr4 (133-193)||(7800998-7801058)
[»] chr5 (4 HSPs)
chr5 (131-193)||(42561973-42562035)
chr5 (132-256)||(9120123-9120247)
chr5 (132-176)||(179418-179462)
chr5 (132-224)||(29688489-29688581)
[»] chr6 (2 HSPs)
chr6 (132-209)||(21016181-21016258)
chr6 (139-179)||(14197337-14197377)
[»] chr7 (1 HSPs)
chr7 (132-193)||(48884184-48884245)
[»] chr1 (5 HSPs)
chr1 (132-193)||(24416138-24416199)
chr1 (138-193)||(24367531-24367586)
chr1 (132-193)||(24340771-24340832)
chr1 (132-193)||(24353136-24353197)
chr1 (141-193)||(24323139-24323191)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 29350707 - 29350841
Alignment:
Q  1 ttttatatctgataatgaacacttggaatgcaagccaattggtaaactttcatatccttctaccagggg-gacggatgcacaaccaaaagaatgtgggca 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29350707 ttttatatctgataataaacacttggaatgcaagccaattggtaaactttcatatccttctaccaggggggacggatgcacaaccaaaagaatgtgggca 29350806  T
Q  100 tgtgccccctctaaattttcaataagactcttgtt 134  Q
    |||||||||||||||||||||||||||||||||||    
T  29350807 tgtgccccctctaaattttcaataagactcttgtt 29350841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 29350829 - 29350907
Alignment:
Q  179 taagactcttgttctgtctatagatgacatttccattaagtactttgccccaatgtgctctacaataagtggtgatatt 257  Q
    ||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  29350829 taagactcttgttctgtctattgatggcatttccaataagtattttgccccaatgtgctctacaataggtggtgatatt 29350907  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 4030443 - 4030364
Alignment:
Q  178 ctaagactcttgttctgtctatagatgacatttccattaagtactttgccccaatgtgctctacaataagtggtgatatt 257  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4030443 ctaagactcttgttctgtctattgatggcatttccattaagtacttttccccaatgtgctctacaataagtggtgatatt 4030364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 4031627 - 4031577
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaag 182  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  4031627 gttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 12195684 - 12195742
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgt 190  Q
    |||||||||||||  |||||||||| ||||   || |||||||||||||||||||||||    
T  12195684 gttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 12440112 - 12440170
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgt 190  Q
    |||||||||||||  |||||||||| ||||   || |||||||||||||||||||||||    
T  12440112 gttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 15349244 - 15349304
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||||||||||| |||||||||| |||| || | || |||||||| |||| |||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttct 15349304  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 257
Target Start/End: Complemental strand, 11015192 - 11015067
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaa 231  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||  ||| |||||||| || ||||| ||||||||||||||| |||| | | ||||||    
T  11015192 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatgacatttccattgagtattatcccccaa 11015093  T
Q  232 tgtgctctacaataagtggtgatatt 257  Q
    | |||||||||| |||||||| ||||    
T  11015092 tatgctctacaaaaagtggtggtatt 11015067  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 11024203 - 11024079
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaat 232  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| || ||||| ||| |||||| |||| ||||   | |||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcctatctattgattacatttacattcagtatgatcccccaat 11024104  T
Q  233 gtgctctacaataagtggtgatatt 257  Q
     |||||||||| | ||||| |||||    
T  11024103 atgctctacaaaatgtggtcatatt 11024079  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 11005628 - 11005540
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtac 221  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||  | ||||| |||| ||||| |||| |||||    
T  11005628 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgtcttatctattgatggcatttgcattcagtac 11005540  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 49038579 - 49038512
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctat 199  Q
    |||||||||||||| |||||||||| |||| | ||||| |||||||||||||||||||||||||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttctgtctat 49038512  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 45371775 - 45371714
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||    
T  45371775 gttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttct 45371714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 257
Target Start/End: Complemental strand, 49043869 - 49043744
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaa 231  Q
    |||||||||||||| |||||||||| |||| ||||||| || |||||||||||||||||| | ||||| |||| |||| ||| | | ||||| || ||||    
T  49043869 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcattacttcgctccaa 49043770  T
Q  232 tgtgctctacaataagtggtgatatt 257  Q
    | || | ||||| || ||||||||||    
T  49043769 tatgttgtacaaaaattggtgatatt 49043744  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 7790441 - 7790517
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatt 209  Q
    ||||||||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||| ||||| |||| ||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatgccatt 7790517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 48870921 - 48871045
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaat 232  Q
    ||||||| ||||| ||||| |||| |||| || | || |||||||| |||||||||||||| ||| | ||||||||||||  | ||| |||| ||||| |    
T  48870921 ttgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccatt 48871020  T
Q  233 gtgctctacaataagtggtgatatt 257  Q
    ||||| ||||| |||||||||||||    
T  48871021 gtgctgtacaaaaagtggtgatatt 48871045  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 48876225 - 48876349
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaat 232  Q
    ||||||| ||||| ||||| |||| |||| || | || |||||||| |||||||||||||| ||| | ||||||||||||  | ||| |||| ||||| |    
T  48876225 ttgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccatt 48876324  T
Q  233 gtgctctacaataagtggtgatatt 257  Q
    ||||| ||||| |||||||||||||    
T  48876325 gtgctgtacaaaaagtggtgatatt 48876349  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 7878743 - 7878804
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||| ||| |||||||||||    
T  7878743 gttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttct 7878804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 48147414 - 48147337
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatt 209  Q
    |||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||  | ||||||| |||| ||||    
T  48147414 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcatt 48147337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 48853041 - 48853102
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||||||||||| |||||||||| |||| ||| ||| |||||||||||||||||||||||    
T  48853041 gttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttct 48853102  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 48864395 - 48864456
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||||||||||| |||||||||| |||| ||||||| ||||||||||||| |||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttct 48864456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 7908663 - 7908723
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||| ||| |||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttct 7908723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 48886607 - 48886731
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaat 232  Q
    ||||||| ||||| ||||| |||| |||| || | || |||||||| |||||||||||||| ||| | |||||||||||   | ||| |||| ||||| |    
T  48886607 ttgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctgatgagtccttttccccatt 48886706  T
Q  233 gtgctctacaataagtggtgatatt 257  Q
    ||||| ||||| |||||||||||||    
T  48886707 gtgctgtacaaaaagtggtgatatt 48886731  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 7786825 - 7786885
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||||||||||| |||||||||| |||  |||||| |||||||| |||||||||||||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttct 7786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 48156130 - 48156072
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgt 190  Q
    |||||||||||||| ||||| |||| |||| ||||||| ||||||||||| ||||||||    
T  48156130 gttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgt 48156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 50666676 - 50666734
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgtt 191  Q
    ||||| ||||||| ||| |||||| |||| ||||||||||||||||||| |||||||||    
T  50666676 ttgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 7237439 - 7237386
Alignment:
Q  137 aatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgt 190  Q
    ||||||||| |||||||||| |||||||||||| | ||||||||| ||||||||    
T  7237439 aatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 7773526 - 7773465
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||||||||||| |||||||||| |||| ||||||| ||||||| |||  ||||||||||    
T  7773526 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttct 7773465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  142 gggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgtt 191  Q
    |||| |||||||||| |||| ||||||| |||||||||||||||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 257
Target Start/End: Complemental strand, 45365921 - 45365796
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaa 231  Q
    |||||||||||||| ||||||||||  ||| ||| ||| |||||||| |||||||  |||||  |||| |||| |||| ||| | | |||||| ||||      
T  45365921 gttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctt 45365822  T
Q  232 tgtgctctacaataagtggtgatatt 257  Q
    | |||||||||| ||| |||||||||    
T  45365821 tatgctctacaaaaagcggtgatatt 45365796  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 45384593 - 45384532
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||||||||||| ||||||||||  ||| ||||||| |||||||| ||||||| ||||||    
T  45384593 gttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttct 45384532  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 7766003 - 7766063
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||||||||||| |||||||||| |||| || |||| || ||||||||||| ||||||||    
T  7766003 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 7766063  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 7771760 - 7771816
Alignment:
Q  137 aatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||||||| |||||||||| |||| ||||||| || |||||||| |||||||||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttct 7771816  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 7813838 - 7813898
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||||||||||  ||||||||| |||| ||||||| ||||||| ||| |||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttct 7813898  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 48903316 - 48903382
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctat 199  Q
    ||||||||||||| |||||||||| |||| ||||||  ||||||||||| | |  ||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaatttgtgttctgtctat 48903382  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 50669446 - 50669503
Alignment:
Q  136 aaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||| ||||| |||||||| | |||  |||||||||||||||||||||||||| ||||    
T  50669446 aaatgtgggtgatgaaagattccaagttgcattcatcttggactaagactcttattct 50669503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 7800998 - 7801058
Alignment:
Q  133 ttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||||||||||  ||||||| | |||| ||||||| ||||||| ||| |||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 7801058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 42562035 - 42561973
Alignment:
Q  131 tgttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||| |||||||| |||||||||| |||| ||||||||||||||||||||| |||||||||    
T  42562035 tgttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttct 42561973  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 256
Target Start/End: Original strand, 9120123 - 9120247
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtactttgccccaa 231  Q
    |||||||||||||| |||||||||| |||| ||||||| |||||||  || ||||||||| ||||||| || | |||||||| ||||   ||| |||| |    
T  9120123 gttgaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgttttgtctattgacggcatttccactaagctattttccccta 9120222  T
Q  232 tgtgctctacaataagtggtgatat 256  Q
    | || || |||| ||||||||||||    
T  9120223 tatgttcaacaaaaagtggtgatat 9120247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 179418 - 179462
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttgg 176  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||    
T  179418 gttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 29688489 - 29688581
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatttccattaagtacttt 224  Q
    |||||||||||||| |||||| ||| |||  |||| || |||||||| |||||||| ||||| ||| | | ||||||| ||||| | ||||||    
T  29688489 gttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttt 29688581  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 21016181 - 21016258
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttctgtctatagatgacatt 209  Q
    ||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||  | | ||||| |||||||||    
T  21016181 gttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacatt 21016258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  139 tatgggttatgaaagaatgcaaaatgcattcatcttggact 179  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 48884184 - 48884245
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||||||| ||| |||||||||| |||| |||||   |||||||||||||||||||||||    
T  48884184 gttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttct 48884245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 24416138 - 24416199
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||| |||||||| |||||||||| ||||  ||| |||||||||||||| |||||||||||    
T  24416138 gttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 24367531 - 24367586
Alignment:
Q  138 atatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    |||||||| ||| |||||| |||| ||||||| ||||||||||| |||||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttct 24367586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 24340771 - 24340832
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||| || ||||| ||||||||||  ||| |||| |||||||||||||| |||||||||||    
T  24340771 gttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24340832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 24353136 - 24353197
Alignment:
Q  132 gttgaaatatgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||| || ||||| ||||||||||  ||| |||| |||||||||||||| |||||||||||    
T  24353136 gttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24353197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 24323139 - 24323191
Alignment:
Q  141 tgggttatgaaagaatgcaaaatgcattcatcttggactaagactcttgttct 193  Q
    ||||| |||||||||| |||| |||| ||||||| |||||| |||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttct 24323191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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