View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_32 (Length: 258)
Name: NF7996_low_32
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 19270114 - 19270355
Alignment:
| Q |
1 |
tccggcagaagtaatcgacctcgaatcattccgcttgtccggcaaacgaccaatctctgccgtcatcgacctttctgacgaagaagatgacgatattaag |
100 |
Q |
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| T |
19270114 |
tccggcagaagtaatcgacctcgaatcattccgcttgtccggcaaacgaccaatctctgccgtcatcgacctttctgatgaagaagatgacgatattaag |
19270213 |
T |
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| Q |
101 |
atcatcaatttcattccaaaaaataccacttatggaaagcgtaaaagaaacaattttgacaaaggagagtcttcaaattcaagtatcactccattcgttt |
200 |
Q |
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| T |
19270214 |
atcatcaatttcattccaaaaaataccccttatggaaagcgtaaaagaaacaagtttgacaaaggagagtcttcaaattcaagtatcactccattcgttt |
19270313 |
T |
|
| Q |
201 |
gcgaaatctgcacggacactaaaacattgaaggacgctattt |
242 |
Q |
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| T |
19270314 |
gcgaaatctgcacggacactaaaacaatgaaggacgctattt |
19270355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 19259924 - 19260157
Alignment:
| Q |
1 |
tccggcagaagtaatcgacctcgaatcattccgcttgtccggcaaacgaccaatctctgccgtcatcgacctttctgacgaagaagatgacgatattaag |
100 |
Q |
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| T |
19259924 |
tccggcagaggtaatggacttcaaatcattccgctcgctcggtaaacgaccaatccccgatgtcatcaatctcttcgatgaagaagacgaaggcattaat |
19260023 |
T |
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| Q |
101 |
atcatcaatttcattccaaaaaataccacttatggaaagcgtaaaagaaacaattttgacaaaggagagtcttcaaattcaagtatcactccattcgttt |
200 |
Q |
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| T |
19260024 |
atcttcaacttcactccgaaaaataactcatatacaaagcctaaaacaaacaacttagaaaaaggagagtcttcaaattcaagtatcactccattcgttt |
19260123 |
T |
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| Q |
201 |
gcgaaatctgcacggacactaaaacattgaagga |
234 |
Q |
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| T |
19260124 |
gcgaaatctgcacggacacgaaaacaatgaagga |
19260157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 19314407 - 19314635
Alignment:
| Q |
6 |
cagaagtaatcgacctcgaatcattccgcttgtccggcaaacgaccaatctctgccgtcatcgacctttctgacgaagaagatgacgatattaagatcat |
105 |
Q |
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|||| ||||||||||| ||| | || ||||| |||||||| ||||| ||||| |||||||| ||||||| || |||||||| || || |||||||||| |
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| T |
19314407 |
cagaggtaatcgaccttgaaacttttcgcttctccggcaagcgacccatctcatccgtcatcaacctttccgatgaagaagacgaagacgttaagatcat |
19314506 |
T |
|
| Q |
106 |
caatttcattccaaaaaataccacttatggaaagcgtaaaagaaacaattttgacaaaggagagtcttcaaattcaagtatcactccattcgtttgcgaa |
205 |
Q |
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| T |
19314507 |
cagtttcattccgaaaactatcccttccacaaaacgtaaaagaaacaacattgaaaaaggagagtcttcaaactcaaataacacccctttcgtttgtgaa |
19314606 |
T |
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| Q |
206 |
atctgcacggacactaaaacattgaagga |
234 |
Q |
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| T |
19314607 |
atctgtactgacactaaaacaatgaagga |
19314635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 13207197 - 13207073
Alignment:
| Q |
110 |
ttcattccaaaaaataccacttatggaaagcgtaaaagaaacaattttgacaaaggagagtcttcaaattcaagtatcactccattcgtttgcgaaatct |
209 |
Q |
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|||||||| ||||||||| || | || | |||||||||||||| | || ||| |||||||||||||||||| || ||||| || ||||||||||||| |
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| T |
13207197 |
ttcattcccaaaaataccctttttcgataacgtaaaagaaacaacatcgaaaaaagagagtcttcaaattcaaataacactcagttggtttgcgaaatct |
13207098 |
T |
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| Q |
210 |
gcacggacactaaaacattgaagga |
234 |
Q |
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|||| || ||||||| | ||||||| |
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| T |
13207097 |
gcaccgaaactaaaagaatgaagga |
13207073 |
T |
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