View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_4 (Length: 507)
Name: NF7996_low_4
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_4 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 33681043 - 33680570
Alignment:
| Q |
1 |
tgataaacggcatttatatttcaactagaaaccaatacaaatgctgggtgaatcggtcgatcacttaactatatatattgcacctatagtatgacttatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33681043 |
tgataaacggcatttatatttcaactagaaaccaatacaaatgctgggtgagtcggtcgatcacttaactatatatattgcacctatagtatgacttatg |
33680944 |
T |
|
| Q |
101 |
agattagaaaaagattatggtacaaatttatttatttgaaagttgcggcatttatattgcatcgttgtgattgtctaannnnnnnnn---aacaaattaa |
197 |
Q |
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| T |
33680943 |
agattagaaaaagattatggtacaaatttatttatttgaaagttgcggcatttatactgcatcgttgtgattgtctaattttttttttttaagaagtcaa |
33680844 |
T |
|
| Q |
198 |
aatggaatataatattaaaccaagagtgaatccccccgcacgaggcgtgctgagagaga--ctcactcagaaatgtacaaagtcacagtttatgccacac |
295 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33680843 |
aatggaatataatattaaaccaagagtgaatcaccccgcacaaggcgtactgagagagagactcactcagaaatgtacaaagtcacagtttatgccacac |
33680744 |
T |
|
| Q |
296 |
tgataggcacctgaagagaaagcgaataataaacaattacatggaaacacttatattgagaggctgatttgatttcaaccacataaaa-aattcagcttc |
394 |
Q |
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||| | |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
33680743 |
tgagaagcacctaaagagaaagcgaataataaacaattacgtggaaacacttatgctgagaggctgatttgatttcaaccacataaaagaattcagtttc |
33680644 |
T |
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| Q |
395 |
actttgtcaaaaaggttacatggttcagacaccgcattttttaagatacggttgttacgttcttttcatataac |
468 |
Q |
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| T |
33680643 |
actttgtcaaaaaggttacatggttcagacaccgcattttttaagatacggttgttacgttcttttcatataac |
33680570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 465
Target Start/End: Original strand, 20114537 - 20114646
Alignment:
| Q |
357 |
ggctgatttgatttcaaccacataaaa-aattcagcttcactttgtcaaaaaggttacatggttcagacaccgcattttttaagatacggttgttacgtt |
455 |
Q |
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|||||||||| ||||||||||||||| |||||| ||||||||||||| ||||| |||| || ||| | || ||||||||||| | |||||||| |||| |
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| T |
20114537 |
ggctgatttgttttcaaccacataaacgaattcaacttcactttgtcagaaagggtacacggatcataagccacattttttaagctgcggttgtttcgtt |
20114636 |
T |
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| Q |
456 |
cttttcatat |
465 |
Q |
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|||| ||||| |
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| T |
20114637 |
ctttccatat |
20114646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 37124942 - 37124880
Alignment:
| Q |
188 |
aacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggcgtgctga |
250 |
Q |
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| T |
37124942 |
aacaaatcaaaatggaatataatattaaaccaaaagtgattcactctgcacaaggcgtgctga |
37124880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 248088 - 248033
Alignment:
| Q |
188 |
aacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggc |
243 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| || | |||||| |||| |
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| T |
248088 |
aacaaatcaaaatggaatataatattaaaccaaaagtgattcgctccgcacaaggc |
248033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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