View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_41 (Length: 208)
Name: NF7996_low_41
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 24883997 - 24883822
Alignment:
| Q |
18 |
tttttgatgatccatttctgtcttggtttattgatttttcgttgtcttctgcgtggaggtatttgtcatggtggcctt-ggagtcgaactaccttttctc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
24883997 |
tttttgatgatccatttctgtcttggtttattgatttttcgttgtcttctgcgtggaggtatttgtcatggcggcctttggagtcgaactaccttttctc |
24883898 |
T |
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| Q |
117 |
tttggaaaagctccgttgctgagatggttaagctgttgttgttggaagttttcagcaaaaagttaatcaaaatcat |
192 |
Q |
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| T |
24883897 |
tttggaaaagctctgttgctgagatggttaagctgttgttgttggaagttttcagcaaaaagttaatcaaaatcat |
24883822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 25567755 - 25567920
Alignment:
| Q |
24 |
atgatccatttctgtcttggtttattgatttttcgttgtcttctgcgtggaggtatttgtcatggtggccttggagtcgaactaccttttctctttggaa |
123 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||| |||||||||||||| |
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| T |
25567755 |
atgatccgtttctgtcttggtttattgattcttcgttgtcttctgcatggaggtatttgtcgtggtggacttggagtcgaactactttttctctttggaa |
25567854 |
T |
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| Q |
124 |
aagctccgttgctgagatggttaagctgttgttgttggaagttttcagcaaaaagttaatcaaaatcat |
192 |
Q |
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| T |
25567855 |
aggttccgt---tgagatggttaagctgttgttgttggaagttttctgcaaaaagttaatcaaaatcat |
25567920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 25464410 - 25464579
Alignment:
| Q |
23 |
gatgatccatttctgtcttggtttattgatttttcgttgtcttctgcgtggaggtatttgtcatggtggccttggagtcgaactaccttttctctttgga |
122 |
Q |
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|||| ||| |||||||||||||||||||||| ||||| | |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
25464410 |
gatgttccgtttctgtcttggtttattgattcttcgtcggcttctgtgtggaggtatttgtcgtggtggccttggagtcgaactactttttctctttgga |
25464509 |
T |
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| Q |
123 |
aaagctccgttgctgagatggttaagctgttgttgttggaagttttcagcaaaaagttaatcaaaatcat |
192 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||| |
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| T |
25464510 |
aaagctcagttgctaagatggttaagctgttgttgttggaagttttctgcaaagatttaatcaaaatcat |
25464579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 25334319 - 25334437
Alignment:
| Q |
74 |
aggtatttgtcatggtggccttggagtcgaactaccttttctctttggaaaagctccgttgctgagatggttaagctgttgttgttggaagttttcagca |
173 |
Q |
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|||||||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25334319 |
aggtatttgttgtggtggccttagagtcgaactactttttctccttggaaaagctccgttgctgagatggttaagctgttgttgttggaagttttctgca |
25334418 |
T |
|
| Q |
174 |
aaaagttaatcaaaatcat |
192 |
Q |
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||||||||||||||||||| |
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| T |
25334419 |
aaaagttaatcaaaatcat |
25334437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 25833631 - 25833773
Alignment:
| Q |
18 |
tttttgatgatccatttctgtcttggtttattgatttttcgttgtcttctgcgtggaggtatttgtcatggtggccttggagtcgaactaccttttctct |
117 |
Q |
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||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||| | ||||||||| | ||| ||| |
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| T |
25833631 |
tttttgatgatccgtttctgtcttggtttgttgattcttcgtcttcttctgcgtggaggtatttgtcgtggtggcttcttagtcgaactgcttttgctcg |
25833730 |
T |
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| Q |
118 |
ttggaaaagctccgttgctgagatggttaagctgttgttgttg |
160 |
Q |
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||||||||||||| ||| ||||||||| ||||||||||||||| |
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| T |
25833731 |
ttggaaaagctccattgatgagatggtgaagctgttgttgttg |
25833773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 25298713 - 25298780
Alignment:
| Q |
123 |
aaagctccgttgctgagatggttaagctgttgttgttggaagttttcagc-aaaaagttaatcaaaatcat |
192 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |
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| T |
25298713 |
aaagctccgttgctgagatggttaagc---tgttgctggaagttttctgcaaaaaagttaatcaaaatcat |
25298780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 25437472 - 25437538
Alignment:
| Q |
123 |
aaagctccgttgctgagatggttaagctgttgttgttggaagttttcagcaaaaagttaatcaaaatcat |
192 |
Q |
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||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||| |
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| T |
25437472 |
aaagctccgttgctgagatggttaagctgatgctt---gaagttttctgcaaaaagttaatcaaaatcat |
25437538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 25765257 - 25765323
Alignment:
| Q |
123 |
aaagctccgttgctgagatggttaagctgttgttgttggaagttttcagcaaaaagttaatcaaaatcat |
192 |
Q |
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|||||||||||||||||||| |||||||| || | ||||||||| |||||||||||||||||||||| |
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| T |
25765257 |
aaagctccgttgctgagatgattaagctgatgcta---gaagttttctgcaaaaagttaatcaaaatcat |
25765323 |
T |
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