View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_5 (Length: 494)
Name: NF7996_low_5
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 14 - 478
Target Start/End: Original strand, 44073699 - 44074166
Alignment:
| Q |
14 |
agaaataacttgagcgaggtcaatttgtgtgggagtgagtgagtgggacttgaatgagaattagaaaaggtcttgttgggacttgggaccacttcataat |
113 |
Q |
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| T |
44073699 |
agaaataacttgagtgaggtcaatttgtgtgggagtgagtg----ggacttgaatgagaattagaaaaggtcttgttgggacttgggaccacttcataat |
44073794 |
T |
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| Q |
114 |
cagattcttcttctttagtaacgcaaaaatgttaaaaagtttaagacnnnnnnnccaatctaactatggatattgtgcacgctgtacatagcctgcaaga |
213 |
Q |
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| T |
44073795 |
cagattcttcttctttagtaacgcaaaaatgttaaaaagtttaagacaaaaaaaccaatctaactatggatattgtgcacgctgtacatagcctgcaaga |
44073894 |
T |
|
| Q |
214 |
acacattgatacgtgtcctatctaagagtgtcgtgccgaccatgcatcactttacttcttttctaaagtttccaagtataatttgataatcttataggat |
313 |
Q |
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| T |
44073895 |
acacattgatacgtgtcctatctaagagtgtcgtgccgaccatgcatcactttacttcttttctaaagtttccaagtataatttgataatcttataggat |
44073994 |
T |
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| Q |
314 |
ttaattcatatacactactataaaatgtaaatattttttacactctcaattaatcaaaaccgcagattcattacaatcaacaaggcaaaagtgaac---t |
410 |
Q |
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| T |
44073995 |
ttaattcatatacactactataaaatgtaaatatattttacactctcaattaatcaaaaccgcagattcattacaatcaacaaggcaaaagtgaacttat |
44074094 |
T |
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| Q |
411 |
tataagttaagcagaaacacactc----gtaatgataatacatcaaaagagactattatcacacttcatatt |
478 |
Q |
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| T |
44074095 |
tataagttaagcagaaacacactcgttagtaatgataatacatcaaaagagactattatcacacttcatatt |
44074166 |
T |
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