View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7996_low_7 (Length: 456)
Name: NF7996_low_7
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_7 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 15012107 - 15012551
Alignment:
| Q |
1 |
ttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgagaaatgcgatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15012107 |
ttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaataagaaatgcgatg |
15012206 |
T |
|
| Q |
101 |
tatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaagtgttacgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15012207 |
tatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaagtgttacgga |
15012306 |
T |
|
| Q |
201 |
cctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatgataaggatt |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15012307 |
cctgagacttgatacgatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatgataaggatt |
15012406 |
T |
|
| Q |
301 |
gcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataatcatcttcaaatatatattgtc |
400 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15012407 |
gcagttgcttgcttaacagaaagcccgctttctcgccctaccatggagcaggtctgcaggcagtttgtaatgtcataatcatcttcaaatatatattgtc |
15012506 |
T |
|
| Q |
401 |
tcgtatatatagcctaaatgttgttttcaccaaatatgcttctct |
445 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15012507 |
tcatatatatagcctaaatgttgttttcaccaaatatgcttctct |
15012551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 15003219 - 15003660
Alignment:
| Q |
1 |
ttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgagaaatgcgatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15003219 |
ttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgagaaatgtgatg |
15003318 |
T |
|
| Q |
101 |
tatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaagtgttacgga |
200 |
Q |
| |
|
| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15003319 |
tgtttagttttgggatattaaccttggaaatgctttttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcgcaaagtgttacgga |
15003418 |
T |
|
| Q |
201 |
cctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatgataaggatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15003419 |
cctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatgataaggatt |
15003518 |
T |
|
| Q |
301 |
gcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataatcatcttcaaatatatattgtc |
400 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
15003519 |
gcagttgcttgcttaactgaaagcccacattctcgccctactatggagcaggtctgcaggcagtttttaatgtcataatcatcttcaaatatatagtgtc |
15003618 |
T |
|
| Q |
401 |
tcgtatatatagcctaaatgttgttttcaccaaatatgcttc |
442 |
Q |
| |
|
|| || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15003619 |
tcatacatatagcctgaatgttgttttcaccaaatatgcttc |
15003660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 15038117 - 15038557
Alignment:
| Q |
1 |
ttcatgttttgtttatggaattatattttacacacgataac-tcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgagaaatgcgat |
99 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| ||||| |||| ||| ||| | ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15038117 |
ttcatgttttgtttatggaatcctatttttcacatgataaaatctt-tttaaatttctacagaacttgcatacacaatggaagtaaatgagaaatgtgat |
15038215 |
T |
|
| Q |
100 |
gtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaagtgttacgg |
199 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
15038216 |
gtgtatggttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcagcaaccttcacaaagtgttgtgg |
15038315 |
T |
|
| Q |
200 |
acctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatgataaggat |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
15038316 |
acctgagacttgatactatgccattgatagataagttagaccaacgtctccctcatcctacaaataccattgttcaagaagtggcatcgatgataaggat |
15038415 |
T |
|
| Q |
300 |
tgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataatcatcttcaaatatatattgt |
399 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15038416 |
tgcagttgcttgcttaactgaaagcccgatttctcgccctaccatggagcaggtctgcaggcagtttgtaatgtcataatcatcttcaaatatatattgt |
15038515 |
T |
|
| Q |
400 |
ctcgtatatatagcctaaatgttgttttcaccaaatatgctt |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15038516 |
ctcgtatatatagcctaaatgttgttttcaccaaatatgctt |
15038557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 57 - 410
Target Start/End: Original strand, 15033594 - 15033947
Alignment:
| Q |
57 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15033594 |
tacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtttagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
15033693 |
T |
|
| Q |
157 |
attgtaacttatttgtggcaacaaccttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15033694 |
attgtaacttatttgtggcaacaaccttcacaaagtgttatggacatgagacctgatactatgcaattgatagataagttggaccagcgtgtccctcatc |
15033793 |
T |
|
| Q |
257 |
ccacaaaaaccattgttcaagaggtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctg |
356 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15033794 |
ccacaaataccattgttcaagaagtggcatcgatgataaggattgcagttgcttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctg |
15033893 |
T |
|
| Q |
357 |
caggcaatttgtaacgtcataatcatcttcaaatatatattgtctcgtatatat |
410 |
Q |
| |
|
||| || ||||||| |||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
15033894 |
cagacagtttgtaatgtcataatcatcttcagatacatattgtctcatatatat |
15033947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 15041680 - 15042069
Alignment:
| Q |
1 |
ttcatgttttgtttatggaattatattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgagaaatgcgatg |
100 |
Q |
| |
|
||||||||||||||||||||| |||| | |||| ||||| |||| ||| ||| | ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
15041680 |
ttcatgttttgtttatggaatcctattattcacatgataaatctt-tttaaatttctacagaacttgcatacacaatggaagtaa-tgagaaatgtgatg |
15041777 |
T |
|
| Q |
101 |
tatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaagtgttacgga |
200 |
Q |
| |
|
| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15041778 |
tgtatagttttggggtattaaccttggaaatacattttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaagtgctacgga |
15041877 |
T |
|
| Q |
201 |
cctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcccacaaaa---accattgttcaagaggtggcatcgatgataagg |
297 |
Q |
| |
|
||||| | ||||||| || |||||||| |||| ||| ||||| |||||||||| ||| ||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
15041878 |
cctgacaattgatactattccattgatggatatgttagaccaacgtctccctcgtcctacaaatgacatcattgttcacaaggtggcatcgatgataagg |
15041977 |
T |
|
| Q |
298 |
attgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataatcatcttcaaa |
389 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||| |
|
|
| T |
15041978 |
attgcagttgcttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgcaagcagtttgtaatgtcataattatcttcaaa |
15042069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 24 - 389
Target Start/End: Complemental strand, 14521615 - 14521250
Alignment:
| Q |
24 |
tattttacacacgataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaacc |
123 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
14521615 |
tatttttcacacgataactcttctttaaatgtttacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggattttaacc |
14521516 |
T |
|
| Q |
124 |
ttggaaatactttttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaagtgttacggacctgagacttgatacaatgccat |
223 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||| | ||||||| |||||| | ||||||| |
|
|
| T |
14521515 |
ttggaaatacttttcggaaagcaccctggagatgttgtaacttctttgtggcaacaatcttcaaaaagtgtcatggacctggaacttgaatctatgccat |
14521416 |
T |
|
| Q |
224 |
tgatagataagttggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatgataaggattgcagttgtttgcttaactgaaag |
323 |
Q |
| |
|
|||| ||||||||||| || |||||||||| ||| ||| | ||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||| |
|
|
| T |
14521415 |
tgatggataagttggatcaacgtctccctcgtccaacagataccattgttcaagaggtggcatcgacgataaggattgcaactgcttgcttgactgaaac |
14521316 |
T |
|
| Q |
324 |
cccgcgttctcgccctaccatggagcaggtctgcaggcaatttgtaacgtcataatcatcttcaaa |
389 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||| |||||| |
|
|
| T |
14521315 |
cccacgttctcgccctaccatggagcaggtctgcaagcagcttgtaatgtcttaatcatattcaaa |
14521250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 36 - 389
Target Start/End: Complemental strand, 14531703 - 14531350
Alignment:
| Q |
36 |
gataactcttctttgaatgtttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactt |
135 |
Q |
| |
|
|||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
14531703 |
gataactcttttttaaatttctacagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattgaccttggaaatactt |
14531604 |
T |
|
| Q |
136 |
tttggaaagcaccctggagatattgtaacttatttgtggcaacaaccttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagt |
235 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||| | ||||||||||||||||||| ||| ||| ||||||||| |||||||||||||| | | |
|
|
| T |
14531603 |
tttggaaaacaccctggagatgttgtaacttctttgtggaagcaaccttcacaaagtgttatagacgtgacacttgataccatgccattgatagagagat |
14531504 |
T |
|
| Q |
236 |
tggaccagcgtctccctcatcccacaaaaaccattgttcaagaggtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcg |
335 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||| | ||||| | ||||||||| |
|
|
| T |
14531503 |
tggaccaacgtctccctcatcccacaaataccattgttcaagaggtggcatctgtggtaaggattgcagttgcttgcttagcagaaagtctgcgttctcg |
14531404 |
T |
|
| Q |
336 |
ccctaccatggagcaggtctgcaggcaatttgtaacgtcataatcatcttcaaa |
389 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
14531403 |
ccctaccatggagcatgtctgcaaacagtttgtaatgtcataatcatcttcaaa |
14531350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 14468895 - 14469001
Alignment:
| Q |
56 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||| ||| ||||||| || |||||||| |
|
|
| T |
14468895 |
ttacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttggagtattaaccttggaaatgcttcttggaaaacatcctggaga |
14468994 |
T |
|
| Q |
156 |
tattgta |
162 |
Q |
| |
|
|||||| |
|
|
| T |
14468995 |
cattgta |
14469001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 14505148 - 14505253
Alignment:
| Q |
57 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
156 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||| |||||| | ||||||||||| ||||||| || |||||||| |
|
|
| T |
14505148 |
tacagaacttgcatatacaatggaagtaaatgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggagac |
14505247 |
T |
|
| Q |
157 |
attgta |
162 |
Q |
| |
|
|||||| |
|
|
| T |
14505248 |
attgta |
14505253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 14483892 - 14483998
Alignment:
| Q |
56 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
155 |
Q |
| |
|
||||||||||| |||||||||| | ||||| ||||| || ||||| ||||||||||| |||||| | ||||||||||| ||||||| || |||||||| |
|
|
| T |
14483892 |
ttacagaacttacatacacaataaacgtaaacgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggaga |
14483991 |
T |
|
| Q |
156 |
tattgta |
162 |
Q |
| |
|
||||||| |
|
|
| T |
14483992 |
tattgta |
14483998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 14521233 - 14521180
Alignment:
| Q |
389 |
atatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatgcttc |
442 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
14521233 |
atatatattgtctcatatatatagccagaatgttgtttttaccaaatatgcttc |
14521180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 58 - 438
Target Start/End: Original strand, 13945 - 14337
Alignment:
| Q |
58 |
acagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagata |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13945 |
acagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattaaccttggaaatactttatggaaagcaccctggagatg |
14044 |
T |
|
| Q |
158 |
ttgtaacttatttgtggcaacaaccttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcc |
257 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||||| |||| ||| ||||||| | ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
14045 |
ttgtaacttctttgtggcagcaagcttcacaaagtgttatggacgtgacacttgatcctatgccattgatagataaattggaccaacgtctccctcatcc |
14144 |
T |
|
| Q |
258 |
cacaaaaaccattgttcaagaggtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgc |
357 |
Q |
| |
|
|||||| |||||||||||||||||| | || || ||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14145 |
cacaaataccattgttcaagaggtgtcttctgtgctaaggattgcagttgcttgcataacaaaaagcccgtgttctcgccctaccatggagcaggtctgc |
14244 |
T |
|
| Q |
358 |
aggcaatttgtaacgtcataatcatcttcaaa------------tatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatg |
438 |
Q |
| |
|
| ||| |||||| |||||| ||| |||||| ||||||||||||| |||||||||||||||| |||| || || ||||||| |
|
|
| T |
14245 |
aagcagcttgtaatgtcatagccatgttcaaagggtcagttacatatatattgtctcatatatatagcctaaatattgtgtttacaaaatatg |
14337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 7570 - 7676
Alignment:
| Q |
56 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7570 |
ttacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttgggatattaaccttggaaatactttttggaaagcatcctggaga |
7669 |
T |
|
| Q |
156 |
tattgta |
162 |
Q |
| |
|
|||||| |
|
|
| T |
7670 |
cattgta |
7676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 58 - 438
Target Start/End: Original strand, 14588 - 14980
Alignment:
| Q |
58 |
acagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagata |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14588 |
acagaacttgcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattaaccttggaaatactttatggaaagcaccctggagatg |
14687 |
T |
|
| Q |
158 |
ttgtaacttatttgtggcaacaaccttcacaaagtgttacggacctgagacttgatacaatgccattgatagataagttggaccagcgtctccctcatcc |
257 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||||| |||| ||| ||||||| | ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
14688 |
ttgtaacttctttgtggcagcaagcttcacaaagtgttatggacgtgacacttgatcctatgccattgatagataaattggaccaacgtctccctcatcc |
14787 |
T |
|
| Q |
258 |
cacaaaaaccattgttcaagaggtggcatcgatgataaggattgcagttgtttgcttaactgaaagcccgcgttctcgccctaccatggagcaggtctgc |
357 |
Q |
| |
|
|||||| |||||||||||||||||| | || || ||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14788 |
cacaaataccattgttcaagaggtgtcttctgtgctaaggattgcagttgcttgcataacaaaaagcccgtgttctcgccctaccatggagcaggtctgc |
14887 |
T |
|
| Q |
358 |
aggcaatttgtaacgtcataatcatcttcaaa------------tatatattgtctcgtatatatagcctaaatgttgttttcaccaaatatg |
438 |
Q |
| |
|
| ||| |||||| |||||| ||| |||||| ||||||||||||| |||||||||||||||| |||| || || ||||||| |
|
|
| T |
14888 |
aagcagcttgtaatgtcatagccatgttcaaagggtcagttacatatatattgtctcatatatatagcctaaatattgtgtttacaaaatatg |
14980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 8214 - 8320
Alignment:
| Q |
56 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8214 |
ttacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttgggatattaaccttggaaatactttttggaaagcatcctggaga |
8313 |
T |
|
| Q |
156 |
tattgta |
162 |
Q |
| |
|
|||||| |
|
|
| T |
8314 |
cattgta |
8320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 17028971 - 17029073
Alignment:
| Q |
60 |
agaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatatt |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
17028971 |
agaacttgcatacacaatggaagtaaatgagagatgtgatgtgtatagtttcggggtattaaccttggaaatactttttggaaagcatcctggagacatt |
17029070 |
T |
|
| Q |
160 |
gta |
162 |
Q |
| |
|
||| |
|
|
| T |
17029071 |
gta |
17029073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 17559407 - 17559509
Alignment:
| Q |
60 |
agaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatatt |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
17559407 |
agaacttgcatacacaatggaagtaaatgagagatgtgatgtgtatagtttcggggtattaaccttggaaatactttttggaaagcatcctggagacatt |
17559506 |
T |
|
| Q |
160 |
gta |
162 |
Q |
| |
|
||| |
|
|
| T |
17559507 |
gta |
17559509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 15664273 - 15664171
Alignment:
| Q |
57 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||| | |||||||||| | |||||| ||||| |||||| |
|
|
| T |
15664273 |
tacagaacttgcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttggggtattggcattggaaataccatatggaaaacacccaggagat |
15664174 |
T |
|
| Q |
157 |
att |
159 |
Q |
| |
|
||| |
|
|
| T |
15664173 |
att |
15664171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 15676103 - 15676001
Alignment:
| Q |
57 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
156 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||| || ||||| |||||||||||||||||| | ||||||||||| | |||||| ||||| |||||| |
|
|
| T |
15676103 |
tacagaatttgcatacacaatggaagtgaatgtgaagtgtgatgtgtatagttttgggatattagcattggaaatactatatggaaaacacccgggagat |
15676004 |
T |
|
| Q |
157 |
att |
159 |
Q |
| |
|
||| |
|
|
| T |
15676003 |
att |
15676001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 17825063 - 17824966
Alignment:
| Q |
57 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggag |
154 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||||||| ||||| |||||||||||| ||||| | ||||||| |||||||||||| |||||||||| |
|
|
| T |
17825063 |
tacagaatatgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaaaactttttggaaaacaccctggag |
17824966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 16173744 - 16173850
Alignment:
| Q |
56 |
ttacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggaga |
155 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||| || ||||| ||||||||||| ||||| | ||||||||||| |||||||| || |||||||| |
|
|
| T |
16173744 |
ttacagaacttgcatacacaacgaaagtaaccgagaagtgtgatgtgtatagttttggagtattagcattggaaatactgtttggaaaacatcctggaga |
16173843 |
T |
|
| Q |
156 |
tattgta |
162 |
Q |
| |
|
| ||||| |
|
|
| T |
16173844 |
tgttgta |
16173850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 16103985 - 16104084
Alignment:
| Q |
57 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
156 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| || ||||| |||||||| ||| ||||| | ||||||| |||||||||||| || || |||||| |
|
|
| T |
16103985 |
tacagaacttgcatacacaacaaaagtgaatgagaagtgtgatgtgtatagtttcggggtattagcattggaaacactttttggaaaacatcccggagat |
16104084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 14607056 - 14607155
Alignment:
| Q |
57 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
156 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||| || ||||| || |||||||| ||||| | |||||||||||||||||||| || || |||||| |
|
|
| T |
14607056 |
tacagaacttgcatacacaacaaaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaatactttttggaaaacatcccggagat |
14607155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 16026230 - 16026329
Alignment:
| Q |
57 |
tacagaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagat |
156 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||| || ||||| || |||||||| ||||| | |||||||||||||||||||| || || |||||| |
|
|
| T |
16026230 |
tacagaacttgcatacacaacaaaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaatactttttggaaaacatcccggagat |
16026329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 31059309 - 31059349
Alignment:
| Q |
73 |
acaatggaagtaaatgagaaatgcgatgtatatagttttgg |
113 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
31059309 |
acaatggaagtgaatgagaaatgtgatgtatacagttttgg |
31059349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 31160127 - 31160167
Alignment:
| Q |
73 |
acaatggaagtaaatgagaaatgcgatgtatatagttttgg |
113 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
31160127 |
acaatggaggtgaatgagaaatgtgatgtatatagttttgg |
31160167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 31242230 - 31242270
Alignment:
| Q |
73 |
acaatggaagtaaatgagaaatgcgatgtatatagttttgg |
113 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
31242230 |
acaatggaggtgaatgagaaatgtgatgtatatagttttgg |
31242270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 13424 - 13323
Alignment:
| Q |
60 |
agaacttgcatacacaatggaagtaaatgagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggagatatt |
159 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||| || ||||| |||||||||||| |||| | | |||||||||| | |||||| |||||||||||||| |
|
|
| T |
13424 |
agaatttgcatacactatggaagtgaatgagaagtgtgatgtgtatagttttggggtatt-agcatggaaatactatatggaaaaaaccctggagatatt |
13326 |
T |
|
| Q |
160 |
gta |
162 |
Q |
| |
|
||| |
|
|
| T |
13325 |
gta |
13323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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