View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7996_low_9 (Length: 446)
Name: NF7996_low_9
Description: NF7996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7996_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 36372915 - 36373359
Alignment:
| Q |
1 |
attgatatttgtattttttgtaaattgtagatgtcgactgatgctagagtgaattccatacacagacagcctcataaatctgataactgttcatgtcagt |
100 |
Q |
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|||||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||| | ||||| |||||||| | |||||||||| || |
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| T |
36372915 |
attgatatttatattttt-gtaaactgtagatatcgactgatgctagagtgaattccgtacacagaaaacctcacaaatctgaccaatgttcatgtcggt |
36373013 |
T |
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| Q |
101 |
ttcatgtaaatttctataatgatcaagattcagttgatacagagataagaactctgaagaaagatgttagtgtgattggtattaagcaaattagcatcct |
200 |
Q |
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|| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36373014 |
ttaaagtaaatttttataatgatcaagattcagttggtacagagataagaactctgaagaaagaggttagtgtgattggtattaagcaaattagcatcct |
36373113 |
T |
|
| Q |
201 |
gcaaagacttcaacgaaatacttgtgaaggatcgttaagagaaaatgatagttcaaaagttaatctttatatgtgggattcatccgaagactgctcttca |
300 |
Q |
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| T |
36373114 |
ccaaagacttcaacgaaatacttgtgaaggatcgttaagagaaaatgatagttcaaaatttaatctttatatgtgggattcatccgaagactgctcttca |
36373213 |
T |
|
| Q |
301 |
ttgccacaatcaagactactttacgggaagtttttgtctgatctttcctggtttgttaccgcgtcatcgttaaataaggtttcatatgtcataagatcgg |
400 |
Q |
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| T |
36373214 |
ttgccacaatcaagactacttttcgggaagtttttgtctgatctttcccggtttgttaccgcgtcatcgttaaagaaggtttcatatgtcataagatcgg |
36373313 |
T |
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| Q |
401 |
ttcaaaacaagattgtgtatgaagttatgggcaatgatcctaatat |
446 |
Q |
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| T |
36373314 |
ttcaaaacaagattgtgtatgaagttatgggcaatgatcctaatat |
36373359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 438
Target Start/End: Complemental strand, 32252955 - 32252533
Alignment:
| Q |
16 |
ttttgtaaattgtagatgtcgactgatgctagagtgaattccatacacagacagcctcataaatctgataactgttcatgtcagtttcatgtaaatttct |
115 |
Q |
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||||||||||||||||||| || |||||| ||| | ||||| ||||| ||||| ||||| ||||| ||| | ||||||||||| ||| ||||||| || | |
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| T |
32252955 |
ttttgtaaattgtagatgtggattgatgcaagaataaattctatacatagacaacctcacaaatccgatcaatgttcatgtcaattttatgtaaactttt |
32252856 |
T |
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| Q |
116 |
ataatgatcaagattcagttgatacagagataagaactctgaagaaagatgttagtgtgattggtattaagcaaattagcatcctgcaaagacttcaacg |
215 |
Q |
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| T |
32252855 |
atgacgatcaaggttcacttggtacagaggtaaaaactcttaataaagaggttaatgcaattggaatggatcaaattttcatcctccaaaggcttcaaca |
32252756 |
T |
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| Q |
216 |
aaatacttgtgaaggatcgttaagagaaaatgatagttcaaaagttaatctttatatgtgggattcatccgaagactgctcttcattgccacaatcaaga |
315 |
Q |
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| T |
32252755 |
taatacttgtgaaggcttgttaaaagaaaatgatacctctgaaattaagccttataggtgggattcatcagaagattgctcttcattatcacaatctaga |
32252656 |
T |
|
| Q |
316 |
ctactttacgggaagtttttgtctgatctttcctggtttgttaccgcgtcatcgttaaataaggtttcatatgtcataagatcggttcaaaacaagattg |
415 |
Q |
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||||| ||||| |||| ||||||||||| |||||||| | | || | ||||| |||||||||| |||||||| || ||||||||||||| |
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| T |
32252655 |
ttacttgttgggaaattttcatctgatctttcgtggtttgtaattacatcttttttaaagaaggtttcattccatataagatctgtgcaaaacaagattg |
32252556 |
T |
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| Q |
416 |
tgtatgaagttatgggcaatgat |
438 |
Q |
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| T |
32252555 |
tgtatcaagttatgggaaatgat |
32252533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 11415635 - 11415885
Alignment:
| Q |
1 |
attgatatttgtattttttgtaaattgtagatgtcgactgatgctagagtgaattccatacacagacagcctcataaatctgataactgttcatgtcagt |
100 |
Q |
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|||||||||| ||||||| | ||||||||||||| ||| ||||||||| ||||||||||||||||| ||| | |||||||| | | ||||||||| | |
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| T |
11415635 |
attgatatttatattttt-gcaaattgtagatgtggacagatgctagaccaaattccatacacagacaacctaacgaatctgatcaatattcatgtcaat |
11415733 |
T |
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| Q |
101 |
ttcatgtaaatttctataatgatcaagattcagttgatacagagataagaactctgaagaaagatgttagtgtgattggtattaagcaaattagcatcct |
200 |
Q |
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|||||||||||||||| ||||||||| |||| ||| |||| || ||| ||||||||| ||||| || | ||| ||||| || | |||||| |||||| |
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| T |
11415734 |
ttcatgtaaatttctacgatgatcaaggttcacttggtacaaagttaaaaactctgaataaagaggtcaatgtaattggaatatatcaaattttcatcct |
11415833 |
T |
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| Q |
201 |
gcaaagacttcaacgaaatacttgtgaaggatcgttaagagaaaatgatagtt |
253 |
Q |
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| T |
11415834 |
ccaaagactttaacaaaatacatgtgaaagattgttaaga-aaactgatagtt |
11415885 |
T |
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