View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7997_high_2 (Length: 717)
Name: NF7997_high_2
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7997_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 13 - 717
Target Start/End: Original strand, 2460240 - 2460946
Alignment:
| Q |
13 |
agcagagaatacaactatagcaaatactgttaatataatactcatgatagttctctaatataattcagttaaaaccaaaaggaaaattatggattatatt |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460240 |
agcagaaaatacaactatagcaaatactgttaatataatactcatgatagttctctaatataattcagttaaaaccaaaaggaaaattatggattatatt |
2460339 |
T |
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| Q |
113 |
aaatcaccaattaagtgttgatgaagataagatgccacataatacaaacctttcttcctgggacattccagaatgaatgcatatggatggaaagttgcat |
212 |
Q |
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| T |
2460340 |
aaatcaccaattaagtgttgatgaagataagatgccacataatacaaacctttcttcctgggacattccagaatgaatgcatatggatggaaagttgcat |
2460439 |
T |
|
| Q |
213 |
tccacaagcaacttgtccagctcagctgctctgctgacacttttcacaaagatcacaacttggttgaagtccagtgcatcaagaagatcgttcaactttc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460440 |
tccacaagcaacttgtccagctcagctgctctgctgacacttttcacaaagatcacaacttggttgaagtccagtgcatcaagaagatcgttcaactttc |
2460539 |
T |
|
| Q |
313 |
ggttcttctcctcctccttcaatttgatgtagtgctgtcatttcaataaccaacgtaaaccac--agctcacacaaattactacagaaaacatgaaggaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2460540 |
ggttcttctcctcctccttcaatttgatgtagtgctgtcatttcaataaccaacgtaaaccacaaagctcacacaaattactacagaaaacatgaaggaa |
2460639 |
T |
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| Q |
411 |
taaaacatttgaatagcacaagacccacctgaacgagaccatgaagggtcaatttcgcttcatcgtcaacataaatttccattggctgaaaggaacaatg |
510 |
Q |
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| T |
2460640 |
taaaacatttgaatagcacaagacccacctgaacgagaccatgaagggtcaatttcgcttcatcgtcaacataaatttccattggctgaaaggaacaatg |
2460739 |
T |
|
| Q |
511 |
tcacagtaaatcatattaggagcctcctttaagataatggaatccagaacgaaatcaatgacggatgcagatccctgaatcacagttctgatccgtttat |
610 |
Q |
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| T |
2460740 |
tcacagtaaatcatattaggagcctcctttaagataatggaatccagaacgaaatcaatgacggatgcagatccctgaatcacagttctgatccgtttat |
2460839 |
T |
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| Q |
611 |
ttggtctccttgctgatgcnnnnnnnagtcagcccaagcaagaaacaccgacatttaattaacactaacaacatcgccaccaacataccgagaatacact |
710 |
Q |
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| T |
2460840 |
ttggtctccttgctgatgctttttttagtcagcccaagcaagaaacactgacatttaattaacactaacaacatcgccaccaacataccgagaatacact |
2460939 |
T |
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| Q |
711 |
aacaact |
717 |
Q |
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||||||| |
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| T |
2460940 |
aacaact |
2460946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 149 - 352
Target Start/End: Complemental strand, 49559163 - 49558960
Alignment:
| Q |
149 |
acataatacaaacctttcttcctgggacattccagaatgaatgcatatggatggaaagttgcattccacaagcaacttgtccagctcagctgctctgctg |
248 |
Q |
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|||||| |||||||||||||| |||||||| ||||| ||||||||||| || ||||| ||||| || | ||| | ||||||||||||| ||||| || |
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| T |
49559163 |
acataaaacaaacctttcttcttgggacatgccagagtgaatgcatatagaaggaaaattgcactctataagtagtctgtccagctcagcggctctacta |
49559064 |
T |
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| Q |
249 |
acacttttcacaaagatcacaacttggttgaagtccagtgcatcaagaagatcgttcaactttcggttcttctcctcctccttcaatttgatgtagtgct |
348 |
Q |
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| T |
49559063 |
acacttttcacaaagataacaacttggttgaagtctagggcatcaagaagatcattcaacttgcggtttttctcttcctctttcaatttgatgtagtgct |
49558964 |
T |
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| Q |
349 |
gtca |
352 |
Q |
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|||| |
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| T |
49558963 |
gtca |
49558960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 449 - 599
Target Start/End: Complemental strand, 49558860 - 49558708
Alignment:
| Q |
449 |
ccatgaagggtcaatttcgcttcatcgtcaacataaatttccattggctgaaaggaac-aatgtcacagtaaatcatattaggagcctcctttaagataa |
547 |
Q |
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||||||||||| || || |||||||| ||||||||||||||||| ||||||||||||| ||| | ||||||||||| ||||| || | | ||| ||| |
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| T |
49558860 |
ccatgaagggttaacttggcttcatcatcaacataaatttccataggctgaaaggaacaaatttgacagtaaatcaagttagggtccgtcctcaagctaa |
49558761 |
T |
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| Q |
548 |
tggaatccagaacgaaatcaatgacggatgcagatccc-tgaatcacagttct |
599 |
Q |
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| T |
49558760 |
tggaatccacaacgaaatgaatgatggatgcagatcccttgaaccacagttct |
49558708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 160 - 322
Target Start/End: Complemental strand, 2454891 - 2454729
Alignment:
| Q |
160 |
acctttcttcctgggacattccagaatgaatgcatatggatggaaagttgcattccacaagcaacttgtccagctcagctgctctgctgacacttttcac |
259 |
Q |
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||||||||||||| |||||||||||||| |||||||| ||||| ||||| || || ||||||||||||| || || ||||||||||| |||||||| || |
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| T |
2454891 |
acctttcttcctgtgacattccagaatgtatgcatattgatgggaagttacactcaacaagcaacttgttcaattctgctgctctgctaacacttttgac |
2454792 |
T |
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| Q |
260 |
aaagatcacaacttggttgaagtccagtgcatcaagaagatcgttcaactttcggttcttctc |
322 |
Q |
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||| || ||||||||||||||||| || |||||||||||||| |||| ||| || |||||||| |
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| T |
2454791 |
aaaaataacaacttggttgaagtcaagagcatcaagaagatcattcagcttacgattcttctc |
2454729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 2454632 - 2454561
Alignment:
| Q |
427 |
cacaagacccacctgaacgagaccatgaagggtcaatttcgcttcatcgtcaacataaatttccattggctg |
498 |
Q |
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| T |
2454632 |
cacaaaacgcacctgaacaagaccatgaagagtcaatttggcctcatcatcaacataaatttccatgggctg |
2454561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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