View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7997_high_4 (Length: 377)
Name: NF7997_high_4
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7997_high_4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 2304557 - 2304206
Alignment:
| Q |
18 |
gttttaccattataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2304557 |
gttttaccattataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggagg |
2304458 |
T |
|
| Q |
118 |
catggaatctcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagc |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2304457 |
catggaatctctacaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagttaaggaagtttagc |
2304358 |
T |
|
| Q |
218 |
ttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2304357 |
ttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattatgtcaagaagcggagatg |
2304258 |
T |
|
| Q |
318 |
atggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2304257 |
atggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct |
2304206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 34990644 - 34990980
Alignment:
| Q |
18 |
gttttaccattataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggagg |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| || | || || | ||||||||| |||||||||||||| ||| | |
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|
| T |
34990644 |
gttttatcattataccaaaggagattagcaagcttagacagctacgccatcttataggttgcaggatgtctttgtttcatttgaaggatgttattggatg |
34990743 |
T |
|
| Q |
118 |
catggaatctcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagc |
217 |
Q |
| |
|
|||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||| ||| |
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|
| T |
34990744 |
catggaatctctacaaacgttgagtggagtgaaaattggtaagggtggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagc |
34990843 |
T |
|
| Q |
218 |
ttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatg |
317 |
Q |
| |
|
||| |||||||||| | |||||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| |||||| ||| |
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|
| T |
34990844 |
ttgaatgatgtgagggcaagacattcaagcgctttatcttcctcactgaatgagatgcgacacttggagaaattacgcattgtgtcaagtagcggatatg |
34990943 |
T |
|
| Q |
318 |
atggggtttttgatgtcattgatttacatttggtttc |
354 |
Q |
| |
|
|| |||| ||||||||||||| | ||||||||||| |
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|
| T |
34990944 |
atatggttcatgatgtcattgatatgcatttggtttc |
34990980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 21 - 369
Target Start/End: Original strand, 34976771 - 34977119
Alignment:
| Q |
21 |
ttaccattataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggaggcat |
120 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||| || |||||||||||||||| ||||| |||| |
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|
| T |
34976771 |
ttaccgttataccaaaggagattagcaagcttagaaagctacgccatcttatgggcaacaagaggtgtatgcttcaattgaaggatgtgttaggatgcat |
34976870 |
T |
|
| Q |
121 |
ggaatctcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttg |
220 |
Q |
| |
|
||||||| | ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| | || |||| ||||||||| |||||| |
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|
| T |
34976871 |
ggaatctttacaaacattgaccggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttg |
34976970 |
T |
|
| Q |
221 |
tttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatg |
320 |
Q |
| |
|
||| |||| ||| ||||||||||| |||| ||| |||||| ||||||||||| ||||| |||||| |||| |||||||||| ||| ||||| || |
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|
| T |
34976971 |
ttttatgtaagggcagaacattcaagcgctctatattcctcactgaatgagatgaaacacttggagaatttatacattgtgtcaggaatgggagacaata |
34977070 |
T |
|
| Q |
321 |
gggtttttgatgtcattgatttacatttggtttcgcttccacctatgct |
369 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
34977071 |
tagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
34977119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 84 - 369
Target Start/End: Original strand, 34983881 - 34984166
Alignment:
| Q |
84 |
tctgtttgtttcaattgaaggatgttataggaggcatggaatctcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaaga |
183 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34983881 |
tctgattgtttcaattgaaggatgttataggaggcatggaatctctacaaacattgagtggagtgaaaattggtaagggtggaatagagttaattaaaga |
34983980 |
T |
|
| Q |
184 |
gttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcg |
283 |
Q |
| |
|
||||||||||||||| |||| ||||||||| | ||||||| ||| |||| |||||||| | ||||||||||||||| ||||||||||||||||||| |
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|
| T |
34983981 |
gttgggaaagctaagacagttaaggaagttgaccttgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacactta |
34984080 |
T |
|
| Q |
284 |
gagaaattatgcattgtgtcaagaagcggagatgatggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct |
369 |
Q |
| |
|
|| |||||||||||||||||| || | | ||||| | || ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
34984081 |
gaaaaattatgcattgtgtcaggatgggaagatggttcttattatgatgtcattgatttacatttggtttcgcctccacctatgct |
34984166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 34984241 - 34984326
Alignment:
| Q |
268 |
tgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatggggtttttgatgtcattgatttacatttggtttcgcttccac |
362 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||| || |||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
34984241 |
tgagatgcgacacttggagaaattatgcattgtg---------ggagatcattttgtttatgctgtcattgatttacatttggtttcgcctccac |
34984326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 27 - 369
Target Start/End: Original strand, 40581334 - 40581676
Alignment:
| Q |
27 |
ttataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggaggcatggaatc |
126 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| || ||||||| | ||| |||||||||||||||| |||||||||| |
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|
| T |
40581334 |
ttataccaaaggacattagcaaacttagaaagctacgccatcttatgggctacaagatgtgtttgtctaaatggaaggatgttataggatgcatggaatc |
40581433 |
T |
|
| Q |
127 |
tcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgat |
226 |
Q |
| |
|
||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||| || |
|
|
| T |
40581434 |
tctacaaacattgagtgcagtgaaaattggtaagggtggaatagagttaattaaagagttgagaaagctaaggcagttaaggaagttgaacttgttttat |
40581533 |
T |
|
| Q |
227 |
gtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatggggttt |
326 |
Q |
| |
|
| |||| |||||||| | ||||||||||||||| ||||||||||||||||||| | | |||||| ||||||| ||| || | ||| | ||| |||| |
|
|
| T |
40581534 |
gcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttgaaaaaattaagcattgtatcaggatggggacaagattttgttt |
40581633 |
T |
|
| Q |
327 |
ttgatgtcattgatttacatttggtttcgcttccacctatgct |
369 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40581634 |
atgatgtcattgatttacatttggtttcgcctccacctatgct |
40581676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 22619814 - 22619678
Alignment:
| Q |
163 |
tggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcg |
262 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| |||||| || | ||| ||| ||| || ||||||| || ||||||||||||| |
|
|
| T |
22619814 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
22619715 |
T |
|
| Q |
263 |
ttgaatgagatgcgacactcggagaaattatgcattg |
299 |
Q |
| |
|
||||||||| ||||||||| ||||||| || |||||| |
|
|
| T |
22619714 |
ttgaatgagctgcgacacttggagaaactacgcattg |
22619678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 30988378 - 30988338
Alignment:
| Q |
32 |
ccaaaggagattagcaagcttagaaagctatgccatcttat |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
30988378 |
ccaaaggagattagcaagcttagaaagctaagacatcttat |
30988338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 22054102 - 22054145
Alignment:
| Q |
32 |
ccaaaggagattagcaagcttagaaagctatgccatcttatggg |
75 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
22054102 |
ccaaaggagattaggaagcttagaaagctaagacatcttatggg |
22054145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 22619909 - 22619851
Alignment:
| Q |
77 |
tacaatatctgtttgtttcaattgaaggatgttataggaggcatggaatctcttcaaac |
135 |
Q |
| |
|
||||| |||| ||||||||||||||||| | |||||||||||||||||| || ||||| |
|
|
| T |
22619909 |
tacaaaatctctttgtttcaattgaagggttgtataggaggcatggaatcgctacaaac |
22619851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 22035913 - 22035942
Alignment:
| Q |
32 |
ccaaaggagattagcaagcttagaaagcta |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22035913 |
ccaaaggagattagcaagcttagaaagcta |
22035942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 22116481 - 22116510
Alignment:
| Q |
32 |
ccaaaggagattagcaagcttagaaagcta |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22116481 |
ccaaaggagattagcaagcttagaaagcta |
22116510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 21931814 - 21931854
Alignment:
| Q |
32 |
ccaaaggagattagcaagcttagaaagctatgccatcttat |
72 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
21931814 |
ccaaaggagattaggaagcttagaaagctaagacatcttat |
21931854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 22029399 - 22029439
Alignment:
| Q |
32 |
ccaaaggagattagcaagcttagaaagctatgccatcttat |
72 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
22029399 |
ccaaaggagattaggaagcttagaaagctaagacatcttat |
22029439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 22188387 - 22188427
Alignment:
| Q |
32 |
ccaaaggagattagcaagcttagaaagctatgccatcttat |
72 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
22188387 |
ccaaaggagattaggaagcttagaaagctaagacatcttat |
22188427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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