View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7997_high_7 (Length: 264)
Name: NF7997_high_7
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7997_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2461162 - 2460923
Alignment:
| Q |
1 |
tcatgggatggagtgtggttgtgttgtgttggccggagctgggagttccagataggcatgttttagataagctcttaattgtggttgtggttcttctcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2461162 |
tcatgggatggagtgtggttgtgttgtgttggccggagctgggagttccagataggcatgttgtagataagctcttaattgtggttgtggttcttct--- |
2461066 |
T |
|
| Q |
101 |
tccatatttttcgttcttttannnnnnnngttggaagttggttgtgtcaattagccttttgtctgatatgggttttcacagcttaggatactgtcaagtt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461065 |
tccatatttttcgttcttttattttttt-gttggaagttggttgtgtcaattagccttttgtctgatatgggttttcacagcttaggatactgtcaagtt |
2460967 |
T |
|
| Q |
201 |
ttcaattttaaggggaggggagttgttagtgtattctcggtatg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460966 |
ttcaattttaaggggaggggagttgttagtgtattctcggtatg |
2460923 |
T |
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