View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7997_high_8 (Length: 223)
Name: NF7997_high_8
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7997_high_8 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 15399 - 15217
Alignment:
| Q |
23 |
gcaaatcagatatagtataagaagtgtctatcaaaagacaaatgaagatatatcaaataaaatggcatgcaattcacagaaatatttacttacagcaatt |
122 |
Q |
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| T |
15399 |
gcaaatcagatatagtataagaagtgtctatcaaaagataagtgaagatatatcaaataaaatggcatgcaattcacagaaatatttactcacagcaatt |
15300 |
T |
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| Q |
123 |
caagcaaaaaatacagtgcttaccttgccgatatagtgaacattaattccatgagcagctagtgcttctgttgatgtctggcc |
205 |
Q |
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| T |
15299 |
caagcaaaaaatacagtgcttaccttgccgatatagcgaacattaattccatgagcagctagtgcttctgttgatgtctggcc |
15217 |
T |
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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 8666227 - 8666130
Alignment:
| Q |
108 |
ttacttacagcaattcaagcaaaaaatacagtgcttaccttgccgatatagtgaacattaattccatgagcagctagtgcttctgttgatgtctggcc |
205 |
Q |
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| T |
8666227 |
ttacttacagcaattaaactaaaaaatacaatgcttaccttgccaatatagcgaacattaattccatgagcatggagtgcttctgttaatgtctggcc |
8666130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 8666328 - 8666252
Alignment:
| Q |
23 |
gcaaatcagatatagtataagaagtgtctatcaaaagacaaatgaagatatatcaaataaaatggcatgcaattcac |
99 |
Q |
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||||||||| |||||| || || ||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
8666328 |
gcaaatcaggaatagtacaataaatgtctatcaaaagacaaggaaagatatatcaaataaaatggcacgcgattcac |
8666252 |
T |
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