View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7997_low_13 (Length: 215)
Name: NF7997_low_13
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7997_low_13 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 203
Target Start/End: Complemental strand, 12535177 - 12535023
Alignment:
| Q |
49 |
atctatttgtgtcgtgtgctcaatgctgcaaacaaatcacacataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttg |
148 |
Q |
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| T |
12535177 |
atctatttgtgtcgtgtgctcaatgctgcaaacaaatcacacataatcttcacaaagagagaaagaatatgactgctgatataatttggtttgatatttg |
12535078 |
T |
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| Q |
149 |
aaattataacgatttgagaagaaaagcaactgaagtattcattccaccattgatg |
203 |
Q |
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| T |
12535077 |
aaattataacgatttgagaataaacgcaactgaagtattcattccaccattgatg |
12535023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 12534154 - 12534035
Alignment:
| Q |
84 |
atcacacataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaag |
183 |
Q |
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| T |
12534154 |
atcacacataatcttcacaaagagagaaagaatatgactgctgatataatttggtttgatatttgaaattataacgatttgagaataaacgcaactgaag |
12534055 |
T |
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| Q |
184 |
tattcattccaccattgatg |
203 |
Q |
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| T |
12534054 |
tattcattccaccattgatg |
12534035 |
T |
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Target: scaffold0096 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 29333 - 29487
Alignment:
| Q |
49 |
atctatttgtgtcgtgtgctcaatgctgcaaacaaatcacacataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttg |
148 |
Q |
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| T |
29333 |
atctatttgtgttgtgtgctcaatgctgccaacatatcacacataatcttcacaaagagagaaagaatatgactgctgatataatttggtttgatatttg |
29432 |
T |
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| Q |
149 |
aaattataacgatttgagaagaaaagcaactgaagtattcattccaccattgatg |
203 |
Q |
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| T |
29433 |
aaattataacgatttgagaataaacgcaactgaagtattcattccaccattgatg |
29487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 22914561 - 22914668
Alignment:
| Q |
89 |
acataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaagtattc |
188 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| | |||||| |||||| |
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| T |
22914561 |
acataatattcacaaagagagaaagaatatgactgctgatataatttgg-------tttgaaattttaacgatttgagaagaaatgtaactgatgtattc |
22914653 |
T |
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| Q |
189 |
attccaccattgatg |
203 |
Q |
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| T |
22914654 |
attccaccattgatg |
22914668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 13594099 - 13594206
Alignment:
| Q |
89 |
acataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaagtattc |
188 |
Q |
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||||||| |||| ||||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||| | |||||| |||||| |
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| T |
13594099 |
acataatattcaaaaagagagaaacaatatgactgctgatataatttggtttgaaattt-------taacgatttgagaagaaatgtaactgatgtattc |
13594191 |
T |
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| Q |
189 |
attccaccattgatg |
203 |
Q |
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| T |
13594192 |
attccaccattgatg |
13594206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 29687277 - 29687384
Alignment:
| Q |
89 |
acataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaagtattc |
188 |
Q |
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||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||| | |||||| |||||| |
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| T |
29687277 |
acataatattcacaaagagagaaacaatatgactgctgatataatttgg-------tttgaaattttaacgatttgagaagaaatgtaactgatgtattc |
29687369 |
T |
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| Q |
189 |
attccaccattgatg |
203 |
Q |
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| T |
29687370 |
attccaccattgatg |
29687384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 2300382 - 2300479
Alignment:
| Q |
106 |
agagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaagtattcattccaccattgatg |
203 |
Q |
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|||||||||||||| ||| | |||||||||||||||| |||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
2300382 |
agagaaagaatatggctgttgatataatttggtttgaaatttgaaattttaatgatttgggaagaaacataactgaagtattcattccaccattgatg |
2300479 |
T |
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