View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7997_low_2 (Length: 224)
Name: NF7997_low_2
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7997_low_2 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 15217 - 15406
Alignment:
| Q |
23 |
ggccagacatcaacagaagcactagctgctcatggaattaatgttcactatatcggcaaggtaagcactgtattttttgcttgaattgctgtaagtaaat |
122 |
Q |
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| T |
15217 |
ggccagacatcaacagaagcactagctgctcatggaattaatgttcgctatatcggcaaggtaagcactgtattttttgcttgaattgctgtgagtaaat |
15316 |
T |
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| Q |
123 |
atttctgtgaattgcatgccattttatttgatatatcttcatttgtcttttgatagacacttcttatactatatctgatttgctcatatt |
212 |
Q |
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| T |
15317 |
atttctgtgaattgcatgccattttatttgatatatcttcacttatcttttgatagacacttcttatactatatctgatttgcccatatt |
15406 |
T |
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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 8666130 - 8666227
Alignment:
| Q |
23 |
ggccagacatcaacagaagcactagctgctcatggaattaatgttcactatatcggcaaggtaagcactgtattttttgcttgaattgctgtaagtaa |
120 |
Q |
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| T |
8666130 |
ggccagacattaacagaagcactccatgctcatggaattaatgttcgctatattggcaaggtaagcattgtattttttagtttaattgctgtaagtaa |
8666227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 8666252 - 8666328
Alignment:
| Q |
129 |
gtgaattgcatgccattttatttgatatatcttcatttgtcttttgatagacacttcttatactatatctgatttgc |
205 |
Q |
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| T |
8666252 |
gtgaatcgcgtgccattttatttgatatatctttccttgtcttttgatagacatttattgtactattcctgatttgc |
8666328 |
T |
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