View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7997_low_3 (Length: 408)

Name: NF7997_low_3
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7997_low_3
NF7997_low_3
[»] chr2 (15 HSPs)
chr2 (13-388)||(8403751-8404123)
chr2 (318-388)||(8429606-8429676)
chr2 (283-362)||(8368104-8368183)
chr2 (283-362)||(8401227-8401306)
chr2 (283-362)||(8422804-8422883)
chr2 (294-348)||(8411867-8411921)
chr2 (294-348)||(8433965-8434019)
chr2 (296-348)||(8376087-8376139)
chr2 (296-348)||(8431018-8431070)
chr2 (280-339)||(8459649-8459708)
chr2 (295-344)||(8416952-8417001)
chr2 (298-348)||(8405747-8405797)
chr2 (116-152)||(8368314-8368350)
chr2 (116-152)||(8401060-8401096)
chr2 (116-152)||(8422637-8422673)
[»] chr4 (2 HSPs)
chr4 (303-366)||(55336088-55336151)
chr4 (302-388)||(55330634-55330720)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 388
Target Start/End: Complemental strand, 8404123 - 8403751
Alignment:
Q  13 aagaaaattactggattgaacaataagatggagattaataatgagagcaataatgggtggaatttggaattggaagatgaaatgaatgaggtaattgaag 112  Q
    |||||||| ||| ||| ||||| ||||||||||||||||   ||| | |||||||| ||||||||||| |||||| |||||||||| |||||||||||||    
T  8404123 aagaaaatgactagatagaacagtaagatggagattaat---gaggggaataatggatggaatttggagttggaaaatgaaatgaaggaggtaattgaag 8404027  T
Q  113 tggtgaagagaaaagatattgaggattatgagagattagggaatattgcatcaaagattaacaagggtttagcaatttttggacctttgttaacaggaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  8404026 tggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaattttaggacctttgttaacaggaat 8403927  T
Q  213 tgcagctataggatcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403926 tgcagctatagggtcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat 8403827  T
Q  313 ggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403826 ggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttg 8403751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 8429676 - 8429606
Alignment:
Q  318 acaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttg 388  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgtagtggattttttgagcttttggaagagacggttg 8429606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 8368183 - 8368104
Alignment:
Q  283 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 362  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8368104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 8401227 - 8401306
Alignment:
Q  283 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 362  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8401306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 8422804 - 8422883
Alignment:
Q  283 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 362  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8422883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
Q  294 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
Q  294 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
Q  296 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
Q  296 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
Q  280 gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag 339  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||||| ||||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag 8459708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
Q  295 gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta 344  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
Q  298 aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  8405797 aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 8368350 - 8368314
Alignment:
Q  116 tgaagagaaaagatattgaggattatgagagattagg 152  Q
    |||||||||||||||| || |||||||||||||||||    
T  8368350 tgaagagaaaagatatggaagattatgagagattagg 8368314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 8401060 - 8401096
Alignment:
Q  116 tgaagagaaaagatattgaggattatgagagattagg 152  Q
    |||||||||||||||| || |||||||||||||||||    
T  8401060 tgaagagaaaagatatggaagattatgagagattagg 8401096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 8422637 - 8422673
Alignment:
Q  116 tgaagagaaaagatattgaggattatgagagattagg 152  Q
    |||||||||||||||| || |||||||||||||||||    
T  8422637 tgaagagaaaagatatggaagattatgagagattagg 8422673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 55336151 - 55336088
Alignment:
Q  303 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatttttt 366  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55336151 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggatttttt 55336088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 55330720 - 55330634
Alignment:
Q  302 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttg 388  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||||||||||  || |||| ||||||||||| ||||    
T  55330720 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttg 55330634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University