View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7997_low_5 (Length: 377)

Name: NF7997_low_5
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7997_low_5
NF7997_low_5
[»] chr1 (5 HSPs)
chr1 (18-369)||(2304206-2304557)
chr1 (18-354)||(34990644-34990980)
chr1 (21-369)||(34976771-34977119)
chr1 (84-369)||(34983881-34984166)
chr1 (268-362)||(34984241-34984326)
[»] chr5 (1 HSPs)
chr5 (27-369)||(40581334-40581676)
[»] chr3 (9 HSPs)
chr3 (163-299)||(22619678-22619814)
chr3 (32-72)||(30988338-30988378)
chr3 (32-75)||(22054102-22054145)
chr3 (77-135)||(22619851-22619909)
chr3 (32-61)||(22035913-22035942)
chr3 (32-61)||(22116481-22116510)
chr3 (32-72)||(21931814-21931854)
chr3 (32-72)||(22029399-22029439)
chr3 (32-72)||(22188387-22188427)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 2304557 - 2304206
Alignment:
Q  18 gttttaccattataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2304557 gttttaccattataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggagg 2304458  T
Q  118 catggaatctcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagc 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2304457 catggaatctctacaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagttaaggaagtttagc 2304358  T
Q  218 ttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2304357 ttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattatgtcaagaagcggagatg 2304258  T
Q  318 atggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2304257 atggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct 2304206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 34990644 - 34990980
Alignment:
Q  18 gttttaccattataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggagg 117  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| || | ||  || | ||||||||| |||||||||||||| ||| |    
T  34990644 gttttatcattataccaaaggagattagcaagcttagacagctacgccatcttataggttgcaggatgtctttgtttcatttgaaggatgttattggatg 34990743  T
Q  118 catggaatctcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagc 217  Q
    |||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||| |||    
T  34990744 catggaatctctacaaacgttgagtggagtgaaaattggtaagggtggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagc 34990843  T
Q  218 ttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatg 317  Q
    |||  ||||||||||  |  |||||||| |||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||| |||||| |||    
T  34990844 ttgaatgatgtgagggcaagacattcaagcgctttatcttcctcactgaatgagatgcgacacttggagaaattacgcattgtgtcaagtagcggatatg 34990943  T
Q  318 atggggtttttgatgtcattgatttacatttggtttc 354  Q
    ||  ||||  ||||||||||||| | |||||||||||    
T  34990944 atatggttcatgatgtcattgatatgcatttggtttc 34990980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 21 - 369
Target Start/End: Original strand, 34976771 - 34977119
Alignment:
Q  21 ttaccattataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggaggcat 120  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |  ||| || ||||||||||||||||  ||||| ||||    
T  34976771 ttaccgttataccaaaggagattagcaagcttagaaagctacgccatcttatgggcaacaagaggtgtatgcttcaattgaaggatgtgttaggatgcat 34976870  T
Q  121 ggaatctcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttg 220  Q
    ||||||| | ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| | || |||| ||||||||| ||||||    
T  34976871 ggaatctttacaaacattgaccggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttg 34976970  T
Q  221 tttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatg 320  Q
    ||| |||| |||  ||||||||||| |||| ||| ||||||  |||||||||||  ||||| |||||| |||| |||||||||| |||  |||||  ||     
T  34976971 ttttatgtaagggcagaacattcaagcgctctatattcctcactgaatgagatgaaacacttggagaatttatacattgtgtcaggaatgggagacaata 34977070  T
Q  321 gggtttttgatgtcattgatttacatttggtttcgcttccacctatgct 369  Q
      | ||||||||||||||||||| |||||||||||| ||||||||||||    
T  34977071 tagattttgatgtcattgatttagatttggtttcgcctccacctatgct 34977119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 84 - 369
Target Start/End: Original strand, 34983881 - 34984166
Alignment:
Q  84 tctgtttgtttcaattgaaggatgttataggaggcatggaatctcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaaga 183  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  34983881 tctgattgtttcaattgaaggatgttataggaggcatggaatctctacaaacattgagtggagtgaaaattggtaagggtggaatagagttaattaaaga 34983980  T
Q  184 gttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcg 283  Q
    ||||||||||||||| |||| ||||||||| | ||||||| ||| ||||  ||||||||  | ||||||||||||||| |||||||||||||||||||      
T  34983981 gttgggaaagctaagacagttaaggaagttgaccttgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacactta 34984080  T
Q  284 gagaaattatgcattgtgtcaagaagcggagatgatggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct 369  Q
    || |||||||||||||||||| || | | ||||| |     || ||||||||||||||||||||||||||||| ||||||||||||    
T  34984081 gaaaaattatgcattgtgtcaggatgggaagatggttcttattatgatgtcattgatttacatttggtttcgcctccacctatgct 34984166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 34984241 - 34984326
Alignment:
Q  268 tgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatggggtttttgatgtcattgatttacatttggtttcgcttccac 362  Q
    |||||||||||||| |||||||||||||||||||         |||||| ||   |||| || |||||||||||||||||||||||||| |||||    
T  34984241 tgagatgcgacacttggagaaattatgcattgtg---------ggagatcattttgtttatgctgtcattgatttacatttggtttcgcctccac 34984326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 27 - 369
Target Start/End: Original strand, 40581334 - 40581676
Alignment:
Q  27 ttataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtttgtttcaattgaaggatgttataggaggcatggaatc 126  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| || ||||||| | ||| |||||||||||||||| ||||||||||    
T  40581334 ttataccaaaggacattagcaaacttagaaagctacgccatcttatgggctacaagatgtgtttgtctaaatggaaggatgttataggatgcatggaatc 40581433  T
Q  127 tcttcaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgat 226  Q
    ||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||| ||    
T  40581434 tctacaaacattgagtgcagtgaaaattggtaagggtggaatagagttaattaaagagttgagaaagctaaggcagttaaggaagttgaacttgttttat 40581533  T
Q  227 gtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatggggttt 326  Q
    | ||||  ||||||||  | ||||||||||||||| ||||||||||||||||||| | | |||||| ||||||| ||| || | ||| | |||   ||||    
T  40581534 gcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttgaaaaaattaagcattgtatcaggatggggacaagattttgttt 40581633  T
Q  327 ttgatgtcattgatttacatttggtttcgcttccacctatgct 369  Q
     ||||||||||||||||||||||||||||| ||||||||||||    
T  40581634 atgatgtcattgatttacatttggtttcgcctccacctatgct 40581676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 299
Target Start/End: Complemental strand, 22619814 - 22619678
Alignment:
Q  163 tggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcg 262  Q
    |||||||||||||||||| |||||||||||| | ||||||| |||||| ||  | ||| ||| ||| ||   |||||||  || |||||||||||||       
T  22619814 tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta 22619715  T
Q  263 ttgaatgagatgcgacactcggagaaattatgcattg 299  Q
    ||||||||| ||||||||| ||||||| || ||||||    
T  22619714 ttgaatgagctgcgacacttggagaaactacgcattg 22619678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 30988378 - 30988338
Alignment:
Q  32 ccaaaggagattagcaagcttagaaagctatgccatcttat 72  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  30988378 ccaaaggagattagcaagcttagaaagctaagacatcttat 30988338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 22054102 - 22054145
Alignment:
Q  32 ccaaaggagattagcaagcttagaaagctatgccatcttatggg 75  Q
    |||||||||||||| ||||||||||||||| | |||||||||||    
T  22054102 ccaaaggagattaggaagcttagaaagctaagacatcttatggg 22054145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 22619909 - 22619851
Alignment:
Q  77 tacaatatctgtttgtttcaattgaaggatgttataggaggcatggaatctcttcaaac 135  Q
    ||||| |||| ||||||||||||||||| |  |||||||||||||||||| || |||||    
T  22619909 tacaaaatctctttgtttcaattgaagggttgtataggaggcatggaatcgctacaaac 22619851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 22035913 - 22035942
Alignment:
Q  32 ccaaaggagattagcaagcttagaaagcta 61  Q
    ||||||||||||||||||||||||||||||    
T  22035913 ccaaaggagattagcaagcttagaaagcta 22035942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 22116481 - 22116510
Alignment:
Q  32 ccaaaggagattagcaagcttagaaagcta 61  Q
    ||||||||||||||||||||||||||||||    
T  22116481 ccaaaggagattagcaagcttagaaagcta 22116510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 21931814 - 21931854
Alignment:
Q  32 ccaaaggagattagcaagcttagaaagctatgccatcttat 72  Q
    |||||||||||||| ||||||||||||||| | ||||||||    
T  21931814 ccaaaggagattaggaagcttagaaagctaagacatcttat 21931854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 22029399 - 22029439
Alignment:
Q  32 ccaaaggagattagcaagcttagaaagctatgccatcttat 72  Q
    |||||||||||||| ||||||||||||||| | ||||||||    
T  22029399 ccaaaggagattaggaagcttagaaagctaagacatcttat 22029439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 22188387 - 22188427
Alignment:
Q  32 ccaaaggagattagcaagcttagaaagctatgccatcttat 72  Q
    |||||||||||||| ||||||||||||||| | ||||||||    
T  22188387 ccaaaggagattaggaagcttagaaagctaagacatcttat 22188427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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