View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7997_low_6 (Length: 342)

Name: NF7997_low_6
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7997_low_6
NF7997_low_6
[»] chr3 (2 HSPs)
chr3 (1-327)||(290027-290353)
chr3 (1-195)||(279714-279908)
[»] chr2 (2 HSPs)
chr2 (1-304)||(24525104-24525408)
chr2 (1-304)||(24531777-24532080)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 290353 - 290027
Alignment:
Q  1 aactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagctgaaatgagtttcgcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  290353 aactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtttggatattcagttgaaatgagtttcgcag 290254  T
Q  101 gaccgccaacaataccagtttctttcatatcaatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcacctcgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  290253 gaccgccaacaataccagtttctttcatatcaatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcaccttgttt 290154  T
Q  201 caaagaaacatcctcttcatatacgaaaccaggtttactcgggctaccaccttctacaccccaccagaatccattaatatatgaataaagaataggacct 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  290153 caaagaaacatcctcttcatatacaaaaccaggtttactcgggctaccaccttctacgccccaccaaaatccattaatatatgaataaagaataggacct 290054  T
Q  301 tttgtatcgacgtgcagccttgctttt 327  Q
    |||||||||||||||||||||||||||    
T  290053 tttgtatcgacgtgcagccttgctttt 290027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 279908 - 279714
Alignment:
Q  1 aactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagctgaaatgagtttcgcag 100  Q
    |||||| ||| || |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||   ||||| ||||||  |||    
T  279908 aactttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacag 279809  T
Q  101 gaccgccaacaataccagtttctttcatatcaatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcacct 195  Q
    |||| |||||||| |||||||||| |||||||| | || |||   ||||||  |  || | |||||||||||| |||||||||||||||| ||||    
T  279808 gacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgacctactgtaacacttaataaacttataatattggtacct 279714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 24525408 - 24525104
Alignment:
Q  1 aactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagctgaaatgagtttcgcag 100  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||     
T  24525408 aactttctagccataccattcatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacat 24525309  T
Q  101 gaccgcc-aacaataccagtttctttcatatcaatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcacctcgtt 199  Q
    |||| || |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  24525308 gaccccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacctcgtt 24525209  T
Q  200 tcaaagaaacatcctcttcatatacgaaaccaggtttactcgggctaccaccttctacaccccaccagaatccattaatatatgaataaagaataggacc 299  Q
    |||| |||| |||||| ||||||||||||| | || |||||||| ||| | | | |||||||||||| |||||||||||||||||||||| |||||| ||    
T  24525208 tcaaggaaatatcctcatcatatacgaaactatgtgtactcgggatactatcatatacaccccaccaaaatccattaatatatgaataaataatagggcc 24525109  T
Q  300 ttttg 304  Q
    |||||    
T  24525108 ttttg 24525104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 24532080 - 24531777
Alignment:
Q  1 aactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagctgaaatgagtttcgcag 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||     
T  24532080 aactttctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttaacat 24531981  T
Q  101 gaccgccaacaataccagtttctttcatatcaatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcacctcgttt 200  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  24531980 gacccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacctcgttt 24531881  T
Q  201 caaagaaacatcctcttcatatacgaaaccaggtttactcgggctaccaccttctacaccccaccagaatccattaatatatgaataaagaataggacct 300  Q
    ||| |||| |||||| ||||||||||||| | || ||||||||  || | | | |||||||||||| |||||||||||||| ||||||| |||||| |||    
T  24531880 caaggaaatatcctcatcatatacgaaactacgtgtactcgggacactatcatatacaccccaccaaaatccattaatatacgaataaataatagggcct 24531781  T
Q  301 tttg 304  Q
    ||||    
T  24531780 tttg 24531777  T

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