View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7997_low_9 (Length: 271)
Name: NF7997_low_9
Description: NF7997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7997_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 6451863 - 6452113
Alignment:
| Q |
1 |
tcttgtgacaatgactttattccatacataagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaatggcaccaggtttctcac |
100 |
Q |
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| T |
6451863 |
tcttgtgacaatgactttattccatacataagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaatggcaccaggtttctcac |
6451962 |
T |
|
| Q |
101 |
tcttaagatctgttaagaatcatataacataaaaccaattagaacgttcatataaaatagacacgttaaatttactaaccgttactttggtagtgaacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6451963 |
tcttaagatctgttaagaatcatataacataaaaccaattagaacgttcatataaaatagacatgttaaatttactaaccgttactttggtagtgaacca |
6452062 |
T |
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| Q |
201 |
accttttctagttggttttctaccagttctaaccctacgagggtagggatg |
251 |
Q |
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| T |
6452063 |
accttttctagttggttttctaccagttctaaccctacgagggtagggatg |
6452113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 6457959 - 6458205
Alignment:
| Q |
7 |
gacaatgactttattccatacataagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaatggcaccaggtttctcactcttaa |
106 |
Q |
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|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
6457959 |
gacagtgattttattccatacataaggaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaatcacacccggtttctcactcttag |
6458058 |
T |
|
| Q |
107 |
gatctgttaagaatcatataa-cataaaaccaattagaacgttcatataaaatagacacgttaaatttactaaccg--ttactttggtagtgaaccaacc |
203 |
Q |
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| T |
6458059 |
gatctgttacgaataaaaaaagcataaaaccaattagaacgtttctacaaaatgaacacattaaattcgctaaccgctatatttcggcagcaaactaacc |
6458158 |
T |
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| Q |
204 |
ttttctagttggttttctaccagttctaaccctacgagggtagggat |
250 |
Q |
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|||||| ||||||||||||||| |||||||||| ||||||||||||| |
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| T |
6458159 |
ttttctggttggttttctaccacttctaaccctgcgagggtagggat |
6458205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 7460172 - 7460225
Alignment:
| Q |
30 |
aagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaat |
83 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
7460172 |
aagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaat |
7460225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 7471748 - 7471801
Alignment:
| Q |
30 |
aagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaat |
83 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
7471748 |
aagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaat |
7471801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 6275431 - 6275484
Alignment:
| Q |
30 |
aagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaat |
83 |
Q |
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|||||| ||||| ||||||||||||||||| |||||||||||||| |||||| |
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| T |
6275431 |
aagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaat |
6275484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 6322298 - 6322350
Alignment:
| Q |
30 |
aagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaa |
82 |
Q |
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|||||| ||||| ||||||||||||||||| ||||||||||||||| |||| |
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| T |
6322298 |
aagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaa |
6322350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 9603473 - 9603361
Alignment:
| Q |
1 |
tcttgtgacaatgactttattccatacataagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaatggcaccaggtttctcac |
100 |
Q |
| |
|
||||| |||||||| ||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| || |||| ||| |||||| |
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| T |
9603473 |
tcttgagacaatgattttattccatatgtaaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacatacatcacacctggtctctcac |
9603374 |
T |
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| Q |
101 |
tcttaagatctgt |
113 |
Q |
| |
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| ||| ||||||| |
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| T |
9603373 |
ttttaggatctgt |
9603361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 9589146 - 9589103
Alignment:
| Q |
29 |
taagaaagtctgatgacttcaagtgaccaaaattttcatctctt |
72 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
9589146 |
taaggaagtctgatgactttaagtgaccaaaattttcatctctt |
9589103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 42687773 - 42687709
Alignment:
| Q |
16 |
tttattccatacataagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacata |
80 |
Q |
| |
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||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42687773 |
tttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctcttggaacata |
42687709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 42694073 - 42694120
Alignment:
| Q |
29 |
taagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaa |
76 |
Q |
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||||||| |||||||| ||||||||||||||| |||||||||||||| |
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| T |
42694073 |
taagaaaatctgatgatttcaagtgaccaaaagcttcatctcttggaa |
42694120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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