View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7998_high_6 (Length: 224)

Name: NF7998_high_6
Description: NF7998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7998_high_6
NF7998_high_6
[»] chr4 (8 HSPs)
chr4 (46-197)||(52895784-52895941)
chr4 (1-50)||(52895622-52895671)
chr4 (49-120)||(31010403-31010473)
chr4 (49-119)||(31494638-31494707)
chr4 (49-119)||(13498094-13498163)
chr4 (49-120)||(22376317-22376387)
chr4 (49-118)||(35675168-35675236)
chr4 (49-117)||(30618012-30618079)
[»] chr1 (7 HSPs)
chr1 (49-120)||(43168204-43168274)
chr1 (49-120)||(14331900-14331970)
chr1 (49-116)||(16691357-16691423)
chr1 (66-117)||(21631209-21631260)
chr1 (49-120)||(44359645-44359715)
chr1 (63-120)||(8892744-8892801)
chr1 (66-117)||(48938714-48938765)
[»] chr6 (2 HSPs)
chr6 (49-117)||(12226311-12226377)
chr6 (65-119)||(6507366-6507420)
[»] chr3 (4 HSPs)
chr3 (66-120)||(46160591-46160645)
chr3 (49-116)||(48313818-48313884)
chr3 (66-120)||(18763-18817)
chr3 (50-120)||(51256050-51256119)
[»] chr8 (4 HSPs)
chr8 (49-120)||(7532848-7532918)
chr8 (78-120)||(5074922-5074964)
chr8 (66-116)||(31596401-31596451)
chr8 (49-115)||(34421299-34421364)
[»] chr7 (4 HSPs)
chr7 (66-117)||(49069634-49069685)
chr7 (49-119)||(31360269-31360338)
chr7 (63-116)||(29247998-29248051)
chr7 (63-116)||(41769628-41769681)
[»] chr5 (1 HSPs)
chr5 (49-120)||(39167658-39167728)
[»] chr2 (1 HSPs)
chr2 (49-120)||(12695212-12695282)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 52895784 - 52895941
Alignment:
Q  46 acaatttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccctnnnnnnnnnnnn--------gtgtg 137  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                    |||||    
T  52895784 acaatttctcaataca-atgtttctatttttatcatcttaacaaatgccc-aaagacactctttagcatttccctgaataaaaaaaaaaaaaaaagtgtg 52895881  T
Q  138 ataaaaattcttacttttgagagatacacgttaatcaaggaaattacggtggataatgaa 197  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52895882 ataaaaattcttacttttgagagatacacattaatcaaggaaattacggtggataatgaa 52895941  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 52895622 - 52895671
Alignment:
Q  1 tacatatagagtaagactgcacaaactgaacatatgactaatcaaacaat 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52895622 tacatatagagtaagactgcacaaactgaacatatgactaatcaaacaat 52895671  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 31010473 - 31010403
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||| | || | |||||||||||||||||||    
T  31010473 atttctcaataca-atgtttctatttttatcatcttaaccaatgctccaagggcactctttagcatttccct 31010403  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 31494707 - 31494638
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccc 119  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||||| ||   ||||||||||||||||||    
T  31494707 atttccaaataca-atgtttctatttttatcatcttaactaatgccccaagagcactctttagcatttccc 31494638  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 13498163 - 13498094
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccc 119  Q
    |||| |||||||| || |||||||||||||||||||||| |||||   || ||||||||||||||||||||    
T  13498163 attttccaataca-atatttctatttttatcatcttaaccaatgcatcaaggacactctttagcatttccc 13498094  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 22376317 - 22376387
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    |||||||||||||| | |||||||||| ||  ||||||| ||||||| || | |||||||||||||||||||    
T  22376317 atttcccaatacattt-tttctattttaattctcttaaccaatgccctaagggcactctttagcatttccct 22376387  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 35675236 - 35675168
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttcc 118  Q
    ||||||||||||| || |||||||||||||| ||||||| ||||||| || | || ||||||| ||||||    
T  35675236 atttcccaataca-atatttctatttttatcgtcttaaccaatgccccaagggcagtctttagaatttcc 35675168  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 30618012 - 30618079
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttc 117  Q
    |||||||||| || || ||||||| |||||| ||||||| ||||||| || | ||||||||||||||||    
T  30618012 atttcccaatgca-atatttctatgtttatcctcttaaccaatgccctaagggcactctttagcatttc 30618079  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 43168204 - 43168274
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| || | |||||||||||||||||||    
T  43168204 atttcccaataca-atgtttctatttttatcatcttaaccaatgccctaagggcactctttagcatttccct 43168274  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 14331900 - 14331970
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||||| || | |||||||||||||||||||    
T  14331900 atttcccaataca-atgtttctatttttatcattttaaccaatgccccaagggcactctttagcatttccct 14331970  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 16691357 - 16691423
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcattt 116  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| || | ||||| |||||||||    
T  16691357 atttcccaataca-atgtttctatttttatcatcttaaccaatgccccaagggcactcattagcattt 16691423  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 21631260 - 21631209
Alignment:
Q  66 tttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttc 117  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  21631260 tttctatttttatcatcttaaccaatgtcccaaagacactctttagcatttc 21631209  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 44359715 - 44359645
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    ||||||| ||||| ||||||||||||||||||||||||| |||| || || | |||||||||||||||||||    
T  44359715 atttcccgataca-atgtttctatttttatcatcttaaccaatggcccaagggcactctttagcatttccct 44359645  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 8892801 - 8892744
Alignment:
Q  63 atgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    |||||||||||||||||||||| || |||| || ||||||| | ||||||||||||||    
T  8892801 atgtttctatttttatcatcttgaccaatgtcccaaagacattgtttagcatttccct 8892744  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 48938714 - 48938765
Alignment:
Q  66 tttctatttttatcatcttaacaaatgcccgaaaga-cactctttagcatttc 117  Q
    |||||||||||||||||||||| |||| || ||||| ||||||||||||||||    
T  48938714 tttctatttttatcatcttaactaatg-cctaaagagcactctttagcatttc 48938765  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 12226377 - 12226311
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttc 117  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  12226377 atttctcaataca-atgtttctatttttatcatcttaactaatgccccaaa-acactctttagcatttc 12226311  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 6507420 - 6507366
Alignment:
Q  65 gtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccc 119  Q
    ||||||||||||||||||||||| | | ||| || |||||| |||||||||||||    
T  6507420 gtttctatttttatcatcttaaccattaccccaaggacactatttagcatttccc 6507366  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 46160591 - 46160645
Alignment:
Q  66 tttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    |||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||    
T  46160591 tttctatttttatcctcttaactaatgccctaaaggcactctttagcatttccct 46160645  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 48313884 - 48313818
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcattt 116  Q
    ||||||||||||| |||||||||||||||| |||||||  ||||||| ||||||| |||||| |||||    
T  48313884 atttcccaataca-atgtttctatttttatgatcttaatcaatgccccaaagacaatctttaacattt 48313818  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 18817 - 18763
Alignment:
Q  66 tttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    |||||||||||||| ||||||| ||||||| || | |||||||||||||||||||    
T  18817 tttctatttttatcctcttaaccaatgccctaagggcactctttagcatttccct 18763  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 51256119 - 51256050
Alignment:
Q  50 tttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    |||||||||||| |||||| |||| ||||||||||||  ||||| | || | |||||||||||||||||||    
T  51256119 tttcccaataca-atgtttatattgttatcatcttaatcaatgctctaagggcactctttagcatttccct 51256050  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 7532848 - 7532918
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    |||| |||||||| || ||||||||||||||  |||||| ||||||| ||  ||||||||||||||||||||    
T  7532848 attttccaataca-atatttctatttttatccccttaaccaatgccctaagaacactctttagcatttccct 7532918  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 5074922 - 5074964
Alignment:
Q  78 tcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    |||||||||| ||||||| |||| |||||||||||||||||||    
T  5074922 tcatcttaaccaatgccctaaaggcactctttagcatttccct 5074964  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 31596451 - 31596401
Alignment:
Q  66 tttctatttttatcatcttaacaaatgcccgaaagacactctttagcattt 116  Q
    |||||||||||||||||||||  |||| || || |||||||||||||||||    
T  31596451 tttctatttttatcatcttaatcaatgtcccaatgacactctttagcattt 31596401  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 34421364 - 34421299
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatt 115  Q
    |||||| |||||| ||||||||||||||||||||||||| |||  || || | ||||||||||||||    
T  34421364 atttccaaataca-atgtttctatttttatcatcttaaccaatttcccaagggcactctttagcatt 34421299  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 49069634 - 49069685
Alignment:
Q  66 tttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttc 117  Q
    |||||||||||||| ||||| | ||||||| |||||||||||||| ||||||    
T  49069634 tttctatttttatcttcttatccaatgccccaaagacactctttaacatttc 49069685  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 31360338 - 31360269
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccc 119  Q
    ||||||||||||| || |||||||||||||| ||| ||| ||| ||| || | ||||||||||||||||||    
T  31360338 atttcccaataca-atatttctatttttatcttctaaactaataccctaagggcactctttagcatttccc 31360269  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 29247998 - 29248051
Alignment:
Q  63 atgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcattt 116  Q
    ||||||||||||||||||||||||  ||||| | ||||||||| |||| |||||    
T  29247998 atgtttctatttttatcatcttaatcaatgctccaaagacactttttatcattt 29248051  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 41769681 - 41769628
Alignment:
Q  63 atgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcattt 116  Q
    ||||||||||||||||||||||||| ||||| | || | ||||||||| |||||    
T  41769681 atgtttctatttttatcatcttaaccaatgctccaagggcactctttaacattt 41769628  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 39167658 - 39167728
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||  | || | |||| ||||||||||||||    
T  39167658 attttccaataca-atgtttctatttttatcatcttaactaatgttccaagggcactatttagcatttccct 39167728  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 12695282 - 12695212
Alignment:
Q  49 atttcccaatacatatgtttctatttttatcatcttaacaaatgcccgaaagacactctttagcatttccct 120  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||| | || |   |||||||||||||||||    
T  12695282 attttccaataca-atgtttctatttttatcatcttaaccaatgctccaagggtgctctttagcatttccct 12695212  T

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