View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7998_low_1 (Length: 500)
Name: NF7998_low_1
Description: NF7998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7998_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 439
Target Start/End: Original strand, 33250915 - 33251342
Alignment:
| Q |
12 |
aagaacaaaacaaacaaacatcaaagccaccactccaccataactccccatcaatgcacccaccaaacccactccaagaagaactccgaagaagaagaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33250915 |
aagaacaaaacaaacaaacatcaaagccaccactccaccataactccccatcaatgcaaccaccaaacccactccaagaagaaccccgaagaagaagaag |
33251014 |
T |
|
| Q |
112 |
acagcaccatcatagtaagcttggtagctagggtaaggatcaactcttccatagaaagaaatatttgaatcgaattttccataacgatcatatccaattt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
33251015 |
acagcaccatcatagtaagcttggtagctagggtaaggatcaactcttccatagaaagaaatatttgaatcgaatcttccataacgatcatatccaactc |
33251114 |
T |
|
| Q |
212 |
gttcagctctaacttgatgacgaggttccatcattcttctatcaaaatatggatttctttctgcaatgttattataacccttgttgaatatagtattttg |
311 |
Q |
| |
|
| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33251115 |
gattagcttcaacttgatgacgtggttccatcattcttctatcaaaatatggatttctttctgcaatgttattatagtccttgttgaatatagtattttg |
33251214 |
T |
|
| Q |
312 |
ttgatgatatggatgatgtgggtaatagtacctgtgaccaggctgcaccatcaagtatatnnnnnnnttaattattggtaatggcataaaaactaaacca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33251215 |
ttgatgatatggatgatgtgggtaatagtacctgtgaccaggctgcaccatcaagtatataaaaaaattaattattggtaatggtataaaaattaaacca |
33251314 |
T |
|
| Q |
412 |
gaagaattgatagatcaatagcaaaggg |
439 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33251315 |
gaagaattgatagatcaatagcaaaggg |
33251342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 40049844 - 40049768
Alignment:
| Q |
188 |
ttccataacgatcatatccaatttgttcagctctaacttgatgacgaggttccatcattcttctatcaaaatatgga |
264 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| | |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
40049844 |
ttccatgacgatcatatccaatttgaccagctctcataggatgactaggttccaccattcttctatcaaaatatgga |
40049768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 40049929 - 40049887
Alignment:
| Q |
121 |
tcatagtaagcttggtagctagggtaaggatcaactcttccat |
163 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
40049929 |
tcatagtaagcttgatagctagtgtaaggatcaactcttccat |
40049887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 1617093 - 1617136
Alignment:
| Q |
328 |
tgtgggtaatagtacctgtgaccaggctgcaccatcaagtatat |
371 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1617093 |
tgtgggtaatagtacctgtgattaggctgcaccatcaagtatat |
1617136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 1616889 - 1616939
Alignment:
| Q |
121 |
tcatagtaagcttggtagctagggtaaggatcaactcttccatagaaagaa |
171 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
1616889 |
tcatagtaagcttgatagctagtgtaaggatcaactctcccatggaaagaa |
1616939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 1616968 - 1617042
Alignment:
| Q |
188 |
ttccataacgatcatatccaatttgttcagctctaacttgatgacgaggttccatcattcttctatcaaaatatg |
262 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| | |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
1616968 |
ttccataacgatcatatccaacttgaccagctcccataggatgactaggttccaccattcttctatcaaaatatg |
1617042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University