View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7998_low_2 (Length: 459)
Name: NF7998_low_2
Description: NF7998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7998_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 53788278 - 53788701
Alignment:
| Q |
17 |
aagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctaagaaaacgtggtgagtaatggtacccactcactct |
116 |
Q |
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| T |
53788278 |
aagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctgagaaaccgtggtgagtaatggtacccactcactct |
53788377 |
T |
|
| Q |
117 |
atctttgctatgatgtgaagtgtgagaaccggggatcccaatataagtgagtcgaacaccacactttaacataaaaccttaagatattgaattttatgga |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | ||||||| |
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| T |
53788378 |
atctttgctatgatgtgaagtgtgagaaccgggaatcccaatataagtgagtccaacaccacactttaacctaaaaccttaagatattgga-tttatggg |
53788476 |
T |
|
| Q |
217 |
tcctataatttataaaattcaatccccannnnnnnaagtaaggtgaaacttttaattcacactttctacacaacaatcttcgtctcatgtataaatataa |
316 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
53788477 |
tcctataatttataaaattcaatccccatttttctaagtaacgtgaaacttttaattcacactttctacacaacaatcttcttctcatgtgtaaatataa |
53788576 |
T |
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| Q |
317 |
gtatgtcaattcattatgctatcactcaaggaagttttttcatttacatacacttacttgcatcgttggtgtgacattcagcagagcacgccgtcaaaac |
416 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
53788577 |
gtatgtcaattcattatgctcccacttaaggaagttttttcatctacatacacttacttgcaccgttggtgtgacattcagtggagcacgccatcaaaac |
53788676 |
T |
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| Q |
417 |
acattgatagaaagactttcaacac |
441 |
Q |
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|| ||||||||||||||||||||| |
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| T |
53788677 |
actgtgatagaaagactttcaacac |
53788701 |
T |
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