View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7998_low_4 (Length: 295)
Name: NF7998_low_4
Description: NF7998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7998_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 41 - 288
Target Start/End: Original strand, 44027305 - 44027552
Alignment:
| Q |
41 |
ctcctcaaccttagaagatgctccaactagatagattacaagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttgac |
140 |
Q |
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| T |
44027305 |
ctcctcaaccttagaagatgctccaactagatagattacaagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttggc |
44027404 |
T |
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| Q |
141 |
gatcaaagaatcacacatttgacacaattaacaattttgaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaatccaaaacacaa |
240 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027405 |
gatcaaagaatcacacatttgacacaatcaacaattttgaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaatccaaaacacaa |
44027504 |
T |
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| Q |
241 |
gtttaaaatatgcaccgctaaattatgatccgatgttccaaatcattg |
288 |
Q |
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| T |
44027505 |
gtttaaaatatgcaccgctaaattatgatccgatgttccaaatcattg |
44027552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 43293656 - 43293409
Alignment:
| Q |
41 |
ctcctcaaccttagaagatgctccaactagatagattacaagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttgac |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43293656 |
ctcctcaaccttagaagatgctccaactagatagattacaagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttggc |
43293557 |
T |
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| Q |
141 |
gatcaaagaatcacacatttgacacaattaacaattttgaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaatccaaaacacaa |
240 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43293556 |
gatcaaagaatcacacatttgacacaatcaacaattttgaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaattcaaaacacaa |
43293457 |
T |
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| Q |
241 |
gtttaaaatatgcaccgctaaattatgatccgatgttccaaatcattg |
288 |
Q |
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| T |
43293456 |
gtttaaaatatgcaccgctaaattatgatccgatgttccaaatcattg |
43293409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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