View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7998_low_5 (Length: 243)

Name: NF7998_low_5
Description: NF7998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7998_low_5
NF7998_low_5
[»] chr7 (8 HSPs)
chr7 (107-243)||(4556277-4556411)
chr7 (1-102)||(46757429-46757531)
chr7 (5-108)||(12732246-12732350)
chr7 (2-100)||(27599218-27599317)
chr7 (2-100)||(46759204-46759303)
chr7 (2-100)||(27600037-27600136)
chr7 (42-107)||(24995852-24995918)
chr7 (25-101)||(24996648-24996725)
[»] chr1 (12 HSPs)
chr1 (2-91)||(11469097-11469187)
chr1 (2-82)||(14925284-14925365)
chr1 (5-101)||(31787484-31787581)
chr1 (2-107)||(31788218-31788324)
chr1 (2-93)||(14924688-14924780)
chr1 (2-54)||(11469707-11469759)
chr1 (1-78)||(7463444-7463522)
chr1 (1-78)||(11426882-11426960)
chr1 (1-78)||(7464011-7464089)
chr1 (13-78)||(37889908-37889974)
chr1 (1-70)||(11427448-11427517)
chr1 (14-101)||(4641716-4641804)
[»] chr8 (16 HSPs)
chr8 (1-70)||(38686341-38686410)
chr8 (5-77)||(38687000-38687073)
chr8 (2-93)||(12350596-12350688)
chr8 (5-82)||(39257659-39257737)
chr8 (5-82)||(43971303-43971381)
chr8 (1-70)||(33801537-33801606)
chr8 (1-93)||(43924504-43924597)
chr8 (2-109)||(43972028-43972136)
chr8 (5-70)||(33802318-33802383)
chr8 (2-93)||(12349981-12350073)
chr8 (2-93)||(43924960-43925052)
chr8 (1-54)||(15183789-15183842)
chr8 (61-109)||(27322588-27322637)
chr8 (42-107)||(40450968-40451034)
chr8 (2-51)||(39258391-39258440)
chr8 (4-107)||(27321599-27321703)
[»] chr4 (17 HSPs)
chr4 (1-70)||(50710358-50710427)
chr4 (1-59)||(50709708-50709766)
chr4 (5-93)||(6246798-6246887)
chr4 (5-70)||(53664250-53664315)
chr4 (2-93)||(10421523-10421615)
chr4 (1-64)||(53665027-53665090)
chr4 (2-93)||(6247412-6247505)
chr4 (4-70)||(6680286-6680352)
chr4 (1-82)||(15481060-15481142)
chr4 (2-54)||(10420971-10421023)
chr4 (2-82)||(15481512-15481593)
chr4 (12-55)||(13856644-13856687)
chr4 (2-100)||(45331395-45331494)
chr4 (39-108)||(232028-232098)
chr4 (5-100)||(30808628-30808724)
chr4 (2-100)||(30809447-30809546)
chr4 (61-108)||(25970105-25970153)
[»] chr2 (14 HSPs)
chr2 (1-70)||(42369681-42369750)
chr2 (5-70)||(8536175-8536240)
chr2 (1-82)||(42370891-42370973)
chr2 (5-101)||(4975702-4975799)
chr2 (1-70)||(8536827-8536896)
chr2 (1-107)||(4976446-4976553)
chr2 (1-107)||(4994353-4994460)
chr2 (5-101)||(4993610-4993707)
chr2 (1-107)||(41519866-41519973)
chr2 (2-100)||(37545683-37545782)
chr2 (61-107)||(23876064-23876111)
chr2 (2-100)||(37546506-37546605)
chr2 (42-107)||(36390957-36391023)
chr2 (45-105)||(36391657-36391718)
[»] chr5 (7 HSPs)
chr5 (2-107)||(4554657-4554763)
chr5 (1-100)||(4555330-4555430)
chr5 (4-102)||(4789525-4789624)
chr5 (4-107)||(26711568-26711673)
chr5 (29-101)||(26712357-26712430)
chr5 (4-107)||(26981305-26981410)
chr5 (29-101)||(26982095-26982168)
[»] scaffold0189 (2 HSPs)
scaffold0189 (2-82)||(12801-12882)
scaffold0189 (5-82)||(12209-12287)
[»] chr3 (5 HSPs)
chr3 (2-93)||(38337419-38337511)
chr3 (1-82)||(38336969-38337049)
chr3 (15-70)||(15450263-15450318)
chr3 (5-107)||(55124414-55124517)
chr3 (61-112)||(49161809-49161861)
[»] chr6 (1 HSPs)
chr6 (2-82)||(27763438-27763519)
[»] scaffold0071 (1 HSPs)
scaffold0071 (15-70)||(11873-11928)
[»] scaffold0129 (1 HSPs)
scaffold0129 (45-108)||(43203-43267)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 4556277 - 4556411
Alignment:
Q  107 catcaacaaaagtcaaagtacatgtttgaacatgtcacttcacacatgtagtgatgataacaaaagttattacaaccaaaagttgacagaagtgtatttt 206  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4556277 catcaacaaaagtcaaagtacatgtttgaacatttcagttcaca--tgtagtgatgataacaaaagttattacaaccaaaagttgacagaagtgtatttt 4556374  T
Q  207 caagggacatatacttcaaatggcacaaaaatagcat 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  4556375 caagggacatatacttcaaatggcacaaaaatagcat 4556411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 46757531 - 46757429
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||  |||||||| ||||    
T  46757531 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaactcctctttcccatactaa 46757432  T
Q  100 acc 102  Q
    |||    
T  46757431 acc 46757429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 12732350 - 12732246
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaacct 103  Q
    ||||||| ||||||||||||| |||||||| ||| | |||||||||||||||||| ||||||||| |||||||||   | || |||||||| |||||||     
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaactctttccctttcccatgctaaaccc 12732251  T
Q  104 cacca 108  Q
    |||||    
T  12732250 cacca 12732246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 27599317 - 27599218
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaa 100  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||  ||  ||||||||| |||||||||||||||| ||||||||| ||||    
T  27599317 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27599218  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 46759204 - 46759303
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaa 100  Q
    ||||||| ||| | ||| ||| || |||||||||||||||||||||||||||| ||| ||||| | ||| ||||||||||||||| |||||||| |||||    
T  46759204 tggtgttaagtatgtataatagaagtatgttctctactttatctaatggtcaagattagctttgctatgatgggaaacaactcccctttcccatactaaa 46759303  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 27600037 - 27600136
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaa 100  Q
    |||||||||| ||||||||||| | | |||||  ||||| ||||| |||||||  ||  |||||||||| ||||||||||||||| ||||||||| ||||    
T  27600037 tggtgttgagagtctatgataagaatgtgttcattacttaatctagtggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27600136  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 24995918 - 24995852
Alignment:
Q  42 atctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaacctcacc 107  Q
    ||||||||||||| |  | |||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  24995918 atctaatggtcaaaaaatactttcccatggtgggaaacaactcccctttcccattctaaaccccacc 24995852  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 24996648 - 24996725
Alignment:
Q  25 attatgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaac 101  Q
    ||||||||||  | || ||||||||||||| |  | |||||||||| ||||||||||||||| |||||||| ||||||    
T  24996648 attatgttcttcaattaatctaatggtcaaaaaatactttcccatggtgggaaacaactcccctttcccatgctaaac 24996725  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 11469187 - 11469097
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcc 91  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||| || |||||    
T  11469187 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattagctttcccatggtgggaaacaacttccctttcc 11469097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 14925284 - 14925365
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaact 82  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||||    
T  14925284 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagctttcccatggtgggaaacaact 14925365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 31787581 - 31787484
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaac 101  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| ||  ||||||| ||||||    
T  31787581 tgttgagtctctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatactaaac 31787484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 31788218 - 31788324
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaa 100  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||||| || |||  ||||||||| ||||||||||||| |   ||||||| |||||    
T  31788218 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttctcattcccatactaaa 31788317  T
Q  101 cctcacc 107  Q
    |||||||    
T  31788318 cctcacc 31788324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 14924780 - 14924688
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttccca 93  Q
    |||||||||||||||||||||||| ||||||||||| || || ||| |||||| ||| |||||||||| ||||||||||||| || |||||||    
T  14924780 tggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttccctttccca 14924688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 11469707 - 11469759
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaa 54  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  11469707 tggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaa 11469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 7463522 - 7463444
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaac 78  Q
    ||||||||||  ||||||||||||| | |||||| || || ||||||||||||| ||| |||||||||| |||||||||    
T  7463522 ttggtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaac 7463444  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 11426960 - 11426882
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaac 78  Q
    ||||||||||  ||||||||||||| | |||||| || || ||||||||||||| ||| |||||||||| |||||||||    
T  11426960 ttggtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7464011 - 7464089
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaac 78  Q
    ||||||||||  |||||||||||| || ||||||||| || |||| |||||||| ||| | |||||||| |||||||||    
T  7464011 ttggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtgggaaac 7464089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 37889974 - 37889908
Alignment:
Q  13 gtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaac 78  Q
    ||||||||||||| | |||||| || || ||||||||||||| ||| |||||||||| |||||||||    
T  37889974 gtctatgataaaactgtgttctttagttaatctaatggtcaaaattcgctttcccatggtgggaaac 37889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11427448 - 11427517
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    ||||||||||  |||||||||||| || ||||||||| || |||| |||||||| ||| | |||||||||    
T  11427448 ttggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatg 11427517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 4641716 - 4641804
Alignment:
Q  14 tctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaac 101  Q
    |||||||||||| ||||||||||| || ||| ||||||  | | || ||||||| | ||||||||||| |||| |||||||| ||||||    
T  4641716 tctatgataaaactatgttctctatttgatccaatggttgaaaattactttcccttggtgggaaacaattcccctttcccatgctaaac 4641804  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38686410 - 38686341
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||    
T  38686410 ttggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatg 38686341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 38687000 - 38687073
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttccca-tgtgggaaa 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  38687000 tgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaatatttactttcccattgtgggaaa 38687073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 12350596 - 12350688
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttccca 93  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| | |||||||| ||||||||||| | || |||||||    
T  12350596 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaggtttcccatggtgggaaacaatttccctttccca 12350688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 39257737 - 39257659
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaact 82  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||| |||||||||||||    
T  39257737 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaact 39257659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 43971381 - 43971303
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaact 82  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||| |||||||||||||    
T  43971381 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaact 43971303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 33801606 - 33801537
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| |||| |||||    
T  33801606 ttggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaatatttacttttccatg 33801537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 43924597 - 43924504
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttccca 93  Q
    |||||||||||||| |||||||||| ||||||||||| || |||||| |||||| ||| |||||||||| ||||||||||||| || |||||||    
T  43924597 ttggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttccca 43924504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 43972028 - 43972136
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaa 100  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||||| || |||  ||||||||| ||||||||||||| |   ||| ||| |||||    
T  43972028 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttctcattctcatactaaa 43972127  T
Q  101 cctcaccat 109  Q
    |||||||||    
T  43972128 cctcaccat 43972136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 33802318 - 33802383
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    |||||||||||||||||||||  |||||||||| ||||| ||||||||||||||| ||||||||||    
T  33802318 tgttgagtgtctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatg 33802383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 12350073 - 12349981
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttccca 93  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||||||| || ||| | ||| |||| ||||||||||||| || |||||||    
T  12350073 tggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttccca 12349981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 43924960 - 43925052
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttccca 93  Q
    |||||||||||||||||||||||| ||||||||||| || |||||| |||||| |||  ||||| ||| ||||||||||||| || |||||||    
T  43924960 tggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttccca 43925052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15183789 - 15183842
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaa 54  Q
    ||||| |||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  15183789 ttggttttgagtgtctgtgataaaatcatgttttctactttatctaatggtcaa 15183842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 27322588 - 27322637
Alignment:
Q  61 ctttcccat-gtgggaaacaactcccatttcccattctaaacctcaccat 109  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  27322588 ctttcccatcgtgggaaacaactcccatttcccatcctaaaccccaccat 27322637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 40450968 - 40451034
Alignment:
Q  42 atctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaacctcacc 107  Q
    |||||||||| || |||| |||||||||| ||||||||||||  |||||||||| ||||||| ||||    
T  40450968 atctaatggttaaaatttactttcccatggtgggaaacaacttacatttcccatactaaaccccacc 40451034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 39258391 - 39258440
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggt 51  Q
    |||||||||||||||| | ||||| |||||||| || |||||||||||||    
T  39258391 tggtgttgagtgtctacggtaaaagtatgttctttagtttatctaatggt 39258440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 27321703 - 27321599
Alignment:
Q  4 gtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaacc 102  Q
    |||||||| || ||| ||||||| |||||||| | || |||||||| |||||| |  ||||  |||| |||||||||||||  ||||||||| |||||||    
T  27321703 gtgttgagggtttataataaaatcatgttctccatttaatctaatgatcaataataactttttcatggtgggaaacaactcttatttcccatgctaaacc 27321604  T
Q  103 tcacc 107  Q
     ||||    
T  27321603 ccacc 27321599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50710358 - 50710427
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||    
T  50710358 ttggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatg 50710427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 50709766 - 50709708
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatattt 59  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  50709766 ttggtgttgagtgtctatgataaaactatgttctctactttatctaatagtcaatattt 50709708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 6246887 - 6246798
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttccca 93  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||  ||||||||| ||||||||||| | || |||||||    
T  6246887 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaatttccctttccca 6246798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 53664315 - 53664250
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||||||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatg 53664250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 10421523 - 10421615
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttccca 93  Q
    |||||||||||||||||||||||| ||||||||||| || |||||| |||||| ||| |||||||||| |||| |||||||| || |||||||    
T  10421523 tggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttccca 10421615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 53665027 - 53665090
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgcttt 64  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||    
T  53665027 ttggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaatatttacttt 53665090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 6247412 - 6247505
Alignment:
Q  2 tggtgttgagtgtctatgataaaat-tatgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttccca 93  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| |||| ||| | ||||||||| || ||||||||| || |||||||    
T  6247412 tggtgttgagtgtctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttccctttccca 6247505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 6680286 - 6680352
Alignment:
Q  4 gtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    ||||||||  |||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||    
T  6680286 gtgttgagaatctatgataaaactatgttctttacttaatctaatggtcaatatttactttcccatg 6680352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15481142 - 15481060
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaact 82  Q
    ||||||||||| ||||||||||||| ||||||||||| || |||||| |||||| ||| |||||||||||  |||||||||||    
T  15481142 ttggtgttgagagtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaact 15481060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 10421023 - 10420971
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaa 54  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  10421023 tggtgttgagtgtctatgataaaagtatgttatctagtttatctaatggtcaa 10420971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 15481512 - 15481593
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttccca-tgtgggaaacaact 82  Q
    ||||||||||| |||||||||||| ||||||||||| || |||||  |||||| ||| | ||||||| ||||||||||||||    
T  15481512 tggtgttgagtttctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaact 15481593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 13856687 - 13856644
Alignment:
Q  12 tgtctatgataaaattatgttctctactttatctaatggtcaat 55  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  13856687 tgtctatgataaaggtatgttctctactttatctaatggtcaat 13856644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 45331395 - 45331494
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaa 100  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||  ||  ||||| ||| |||||||||||||||| |||| |||| ||||    
T  45331395 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttctcatggtgggaaacaactcccctttctcattttaaa 45331494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 232028 - 232098
Alignment:
Q  39 tttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaacctcacca 108  Q
    ||||||||||||| || |||| |||||||||| |||||||||||| || |||||||| ||||||| |||||    
T  232028 tttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaaccccacca 232098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 30808724 - 30808628
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaa 100  Q
    ||||||||||||||||||| | | | |||  ||||| |||||||||||||  ||  |||||||||| ||||||||||||| | ||||||||| ||||    
T  30808724 tgttgagtgtctatgataagaatgtattcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactctcctttcccattttaaa 30808628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 30809447 - 30809546
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaa 100  Q
    |||||||||| ||||||||||||| | |||||  ||||| ||||| |||||||  ||  ||||| ||| |||| ||||||||||| ||||||||| ||||    
T  30809447 tggtgttgagagtctatgataaaaatgtgttcattacttaatctagtggtcaaatttaactttctcatggtggaaaacaactcccctttcccattttaaa 30809546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 25970153 - 25970105
Alignment:
Q  61 ctttcccatg-tgggaaacaactcccatttcccattctaaacctcacca 108  Q
    |||||||||| ||||||||||||||| |||||||| ||||||| |||||    
T  25970153 ctttcccatggtgggaaacaactcccctttcccatgctaaaccccacca 25970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42369750 - 42369681
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  42369750 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggctaatatttactttcccatg 42369681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 8536240 - 8536175
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  8536240 tgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatg 8536175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 42370891 - 42370973
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaact 82  Q
    ||||||| ||||||||||||||||| ||| ||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  42370891 ttggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaact 42370973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 4975799 - 4975702
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaac 101  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||| ||||||||||||| ||  ||||||| ||||||    
T  4975799 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatactaaac 4975702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8536827 - 8536896
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||| |||| |||||    
T  8536827 ttggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaacatttacttttccatg 8536896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4976446 - 4976553
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaa 99  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||| || |||  ||||||||| ||||||||||||| |   | ||||| ||||    
T  4976446 ttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttctcatccccatactaa 4976545  T
Q  100 acctcacc 107  Q
    ||||||||    
T  4976546 acctcacc 4976553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4994353 - 4994460
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaa 99  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||| || |||  ||||||||| ||||||||||||| |   | ||||| ||||    
T  4994353 ttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttctcatccccatactaa 4994452  T
Q  100 acctcacc 107  Q
    ||||||||    
T  4994453 acctcacc 4994460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 4993707 - 4993610
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaac 101  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||| |||| |||||||| ||  ||||||| ||||||    
T  4993707 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttcccattcccatactaaac 4993610  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41519866 - 41519973
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaa 99  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||| ||| |||||| |    ||||||||| |||||||| |||| || |||||||| ||||    
T  41519866 ttggtgttgggtgtctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttccctttcccatactaa 41519965  T
Q  100 acctcacc 107  Q
    || |||||    
T  41519966 acttcacc 41519973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 37545782 - 37545683
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaa 100  Q
    |||||||||||||||||||||| | | |||||  ||||| |||||||||||||  ||  ||||||||| ||||||||||||| || ||||| ||| ||||    
T  37545782 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaacttccctttcctattttaaa 37545683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 23876064 - 23876111
Alignment:
Q  61 ctttcccatg-tgggaaacaactcccatttcccattctaaacctcacc 107  Q
    |||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  23876064 ctttcccatggtgggaaacaactcccatttcccatgctaaaccccacc 23876111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 37546506 - 37546605
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaa 100  Q
    |||||||||| ||||| ||||| | | |||||  ||||| ||||| |||||||  ||  |||||||||| ||||||||||||||| ||||||||| ||||    
T  37546506 tggtgttgagagtctacgataagaatgtgttcgttacttaatctagtggtcaaatttaactttcccatgatgggaaacaactcccctttcccattttaaa 37546605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 36391023 - 36390957
Alignment:
Q  42 atctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaacctcacc 107  Q
    |||||||||| || |||| |||||||||| |||||||||||| || |||||||| ||||||| ||||    
T  36391023 atctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatgctaaaccccacc 36390957  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 36391657 - 36391718
Alignment:
Q  45 taatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaacctca 105  Q
    ||||||| || |||| |||||||||| ||| ||||||||||| |||||||| ||||||||||    
T  36391657 taatggttaaaatttactttcccatggtggaaaacaactcccctttcccatactaaacctca 36391718  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 4554763 - 4554657
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaa 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||| |||| |||||| |  | |||||||| |||||    
T  4554763 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttcccatactaaa 4554664  T
Q  101 cctcacc 107  Q
    || ||||    
T  4554663 ccccacc 4554657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4555330 - 4555430
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaa 99  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||| || | |||| ||| |||||||||| || |||||||||| || |||||||| ||||    
T  4555330 ttggtgttgagtgtctacgataaaagtatgttctccactttatccaacgttcaaaattagctttcccatggtaggaaacaacttccctttcccatactaa 4555429  T
Q  100 a 100  Q
    |    
T  4555430 a 4555430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 4789624 - 4789525
Alignment:
Q  4 gtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaacc 102  Q
    |||||||| || ||| ||||||| |||||||| | || ||||||||||||| | |  |||||||||| ||||||||||||||| |||||||| |||||||    
T  4789624 gtgttgagggtttataataaaatcatgttctccatttgatctaatggtcaagaataactttcccatggtgggaaacaactcccctttcccatgctaaacc 4789525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 26711673 - 26711568
Alignment:
Q  4 gtgttgagtgtctatgataaaattatgttctctactttatctaatggtc-aatatttgctttcccatg-tgggaaacaactcccatttcccattctaaac 101  Q
    |||||||  ||| ||||||||||| ||||||||| || ||||| ||||| || |||| |||||| ||| ||||||||||||  | |||||||| ||||||    
T  26711673 gtgttgaaagtccatgataaaattgtgttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaac 26711574  T
Q  102 ctcacc 107  Q
    | ||||    
T  26711573 cccacc 26711568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 26712357 - 26712430
Alignment:
Q  29 tgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaac 101  Q
    |||||| ||||| |||| ||||| || ||| ||||||||||| |||||||||||| || |||||||| ||||||    
T  26712357 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaac 26712430  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 26981410 - 26981305
Alignment:
Q  4 gtgttgagtgtctatgataaaattatgttctctactttatctaatggtc-aatatttgctttcccatg-tgggaaacaactcccatttcccattctaaac 101  Q
    |||||||  ||| ||||||||||| ||||||||| || ||||| ||||| || |||| |||||| ||| ||||||||||||  | |||||||| ||||||    
T  26981410 gtgttgaaagtccatgataaaattgtgttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaac 26981311  T
Q  102 ctcacc 107  Q
    | ||||    
T  26981310 cccacc 26981305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 26982095 - 26982168
Alignment:
Q  29 tgttctctactttatctaatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaac 101  Q
    |||||| ||||| |||| ||||| || ||| ||||||||||| |||||||||||| || |||||||| ||||||    
T  26982095 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaac 26982168  T

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Target: scaffold0189 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 12801 - 12882
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaact 82  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||  ||||||||| |||||||||||||    
T  12801 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggtgggaaacaact 12882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 12287 - 12209
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaact 82  Q
    ||||||||||||||||||||| ||||||||||| || |||||| |||||| |||   |||| ||| |||||||||||||    
T  12287 tgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaact 12209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 38337419 - 38337511
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttccca 93  Q
    |||||||||||||||||||||||| ||||||||||| || |||||| |||||| ||| |||||||||| ||||||||||||| || |||||||    
T  38337419 tggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttccca 38337511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38337049 - 38336969
Alignment:
Q  1 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaact 82  Q
    ||||||||||||||||  ||||||| ||||||||||| || |||||| |||||| ||| |||||||||| |||||||||||||    
T  38337049 ttggtgttgagtgtct--gataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaact 38336969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 15450318 - 15450263
Alignment:
Q  15 ctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    ||||||||||| |||||||||||||| ||||||||||||| |||  ||||||||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatg 15450263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 55124517 - 55124414
Alignment:
Q  5 tgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaactcccatttcccattctaaacct 103  Q
    |||||||  |||||||||||| |||||||| ||| | ||||||| ||||||||||  |||||||| |||||||||   | || |||||||| |||||||     
T  55124517 tgttgagaatctatgataaaactatgttctttacatgatctaatagtcaatatttattttcccatggtgggaaactctttccctttcccatgctaaaccc 55124418  T
Q  104 cacc 107  Q
    ||||    
T  55124417 cacc 55124414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 49161809 - 49161861
Alignment:
Q  61 ctttcccatg-tgggaaacaactcccatttcccattctaaacctcaccatcaa 112  Q
    |||||||||| |||||||||| |||| |||||||| |||||||||||| ||||    
T  49161809 ctttcccatggtgggaaacaattcccctttcccatgctaaacctcaccttcaa 49161861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 27763519 - 27763438
Alignment:
Q  2 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccat-gtgggaaacaact 82  Q
    ||||||||||||||| |||||||| ||||||||||| || |||||| |||||| ||| | |||||| | |||||||||||||    
T  27763519 tggtgttgagtgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaact 27763438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 11873 - 11928
Alignment:
Q  15 ctatgataaaattatgttctctactttatctaatggtcaatatttgctttcccatg 70  Q
    ||||||||||| |||||||||||||| ||||||||||||| |||  ||||||||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatg 11928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 43203 - 43267
Alignment:
Q  45 taatggtcaatatttgctttcccatg-tgggaaacaactcccatttcccattctaaacctcacca 108  Q
    ||||||| || |||| |||||||||| ||||||||||||||| ||| |||| ||||||| |||||    
T  43203 taatggttaagatttactttcccatgatgggaaacaactccccttttccatactaaaccccacca 43267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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