View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7999_high_1 (Length: 533)

Name: NF7999_high_1
Description: NF7999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7999_high_1
NF7999_high_1
[»] chr8 (12 HSPs)
chr8 (28-345)||(33953913-33954216)
chr8 (28-345)||(33976514-33976819)
chr8 (28-345)||(33961219-33961522)
chr8 (368-515)||(33953769-33953916)
chr8 (368-515)||(33993289-33993436)
chr8 (368-515)||(33976370-33976517)
chr8 (229-345)||(33993433-33993550)
chr8 (368-515)||(33961075-33961222)
chr8 (325-440)||(33983454-33983569)
chr8 (229-285)||(33983677-33983733)
chr8 (28-213)||(33983751-33983937)
chr8 (367-515)||(33914591-33914736)
[»] scaffold0391 (1 HSPs)
scaffold0391 (338-515)||(13333-13510)
[»] chr7 (2 HSPs)
chr7 (325-509)||(8275468-8275652)
chr7 (151-323)||(8275222-8275392)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 345
Target Start/End: Complemental strand, 33954216 - 33953913
Alignment:
Q  28 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||             ||||| ||    
T  33954216 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcagaaaca--gg-------------gaaccaaa 33954132  T
Q  128 ggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnntt 227  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||       ||    
T  33954131 ggactacaaaaagctttttagagttggagaagcatagaaggatttactaccaccttattagaatgtaaataaatcaatagaatgagctgataaaaaaatt 33954032  T
Q  228 taaaattgaatttattgattgagaatagctaatacaaatcatgtatttatac-aaaagaaattacaaaatattacaaaagaattttaattatatactgta 326  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||    
T  33954031 aaaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatatgctata 33953932  T
Q  327 caaaagtcattcaaagaag 345  Q
    |||||||||||||||||||    
T  33953931 caaaagtcattcaaagaag 33953913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 28 - 345
Target Start/End: Complemental strand, 33976819 - 33976514
Alignment:
Q  28 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtat--gaacct 125  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||| |||  |   ||||||    
T  33976819 agaccatgcttggcaaattttgaggatcaactgcttctagccgactttgatctatgactgaagaactcagaaacaa-ggaacaaaaaaaaaaaggaacct 33976721  T
Q  126 aaggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnn 225  Q
    ||||||||||||||||||||||||  ||||||||||||          ||||||||||||| |||||||||||||||| |||||||||  | |           
T  33976720 aaggactacgaaaagctttttagaactggagaagcata----------ctaccaccttattatcatgtaaataaatcattagaatgagtagttaaaa--- 33976634  T
Q  226 tttaaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatactgt 325  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  33976633 ttaaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatgctat 33976534  T
Q  326 acaaaagtcattcaaagaag 345  Q
    ||||||||||||||||||||    
T  33976533 acaaaagtcattcaaagaag 33976514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 28 - 345
Target Start/End: Complemental strand, 33961522 - 33961219
Alignment:
Q  28 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa 127  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||| |||  | ||||||||    
T  33961522 agaccatgcttggaaaattttgaggatcaactgcttctagccgactttgatctatgactgaagaactcagaaacaa-ggaacaaaaaaaaaggaacctaa 33961424  T
Q  128 ggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnntt 227  Q
    |||||||||||| |||||||||  ||||||||||||          |||||| |||||| || ||||||||||||| |||||||||  | |       ||    
T  33961423 ggactacgaaaaactttttagaactggagaagcata----------ctaccagcttattatcttgtaaataaatcattagaatgagtagttaaaa---tt 33961337  T
Q  228 taaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatactgtac 327  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  33961336 aaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatgctatac 33961237  T
Q  328 aaaagtcattcaaagaag 345  Q
    ||||||||||||||||||    
T  33961236 aaaagtcattcaaagaag 33961219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 33953916 - 33953769
Alignment:
Q  368 gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagctgatgtctcttcatcaga 467  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||  |    
T  33953916 gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca 33953817  T
Q  468 agttattgtctttaagttctgaagattgacaactgaaaatggcaattc 515  Q
     ||||| ||||| || |||||||||||||||||||| |||||||||||    
T  33953816 ggttatcgtcttcaaattctgaagattgacaactgagaatggcaattc 33953769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 33993436 - 33993289
Alignment:
Q  368 gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagctgatgtctcttcatcaga 467  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||  |    
T  33993436 gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca 33993337  T
Q  468 agttattgtctttaagttctgaagattgacaactgaaaatggcaattc 515  Q
     ||||| ||||| || |||||||||||||||||||| |||||||||||    
T  33993336 ggttatcgtcttcaaattctgaagattgacaactgagaatggcaattc 33993289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 33976517 - 33976370
Alignment:
Q  368 gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagctgatgtctcttcatcaga 467  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||||||  |    
T  33976517 gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgtgaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca 33976418  T
Q  468 agttattgtctttaagttctgaagattgacaactgaaaatggcaattc 515  Q
     ||||| ||||| || |||||||||||||||||||| |||||||||||    
T  33976417 ggttatcgtcttcaaattctgaagattgacaactgagaatggcaattc 33976370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 33993550 - 33993433
Alignment:
Q  229 aaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaa-gaaattacaaaatattacaaaagaattttaattatatactgtac 327  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||    
T  33993550 aaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatatgctatac 33993451  T
Q  328 aaaagtcattcaaagaag 345  Q
    ||||||||||||||||||    
T  33993450 aaaagtcattcaaagaag 33993433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 33961222 - 33961075
Alignment:
Q  368 gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagctgatgtctcttcatcaga 467  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||||||||  |    
T  33961222 gaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctgaaaatcttcccatgtagcagccgtctcttcatcgca 33961123  T
Q  468 agttattgtctttaagttctgaagattgacaactgaaaatggcaattc 515  Q
     ||||| ||||| || ||||||||||||| |||||| |||||||||||    
T  33961122 ggttatcgtcttcaaattctgaagattgaaaactgagaatggcaattc 33961075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 325 - 440
Target Start/End: Complemental strand, 33983569 - 33983454
Alignment:
Q  325 tacaaaagtcattcaaagaagaggtcttagcagatcatttattgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagca 424  Q
    |||| ||||||||||||||||||||||||  |||||||||| | |||  | ||||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  33983569 tacagaagtcattcaaagaagaggtcttatgagatcatttactaaagttagtttaagttagcatcaacctgaggaacctctatcttcatattaggaagca 33983470  T
Q  425 tatgctggaaatcttc 440  Q
    || |||||||||||||    
T  33983469 taagctggaaatcttc 33983454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 33983733 - 33983677
Alignment:
Q  229 aaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaaga 285  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33983733 aaaattgaatttattgattgagaatagctaatacaaatcatgtagttatacaaaaga 33983677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 33983937 - 33983751
Alignment:
Q  28 agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa 127  Q
    |||||||| ||||||| ||| ||||||| ||  ||| ||||| | |||||||||||||||||||||||  |||  | |||| |||||| ||  |||||||    
T  33983937 agaccatgtttgacaagtttggaggatcgacaactttttgccaaatttgatctatgattgaagaactc-aaaaatagggaaaaagaaaatagaaacctaa 33983839  T
Q  128 ggact-acgaaaagcttttt-agagttggagaagc--atagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgag 213  Q
    | ||| |  ||||||||||| |||||||||||| |  |||||||| |||||||   | ||||| ||||||||| ||||| ||||||||||    
T  33983838 gtactaaaaaaaagctttttaagagttggagaaccatatagaaggatttacta--gctttattatcatgtaaaaaaatctatagaatgag 33983751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 515
Target Start/End: Complemental strand, 33914736 - 33914591
Alignment:
Q  367 tgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagctgatgtctcttcatcag 466  Q
    ||||||||||||||||| || ||||| ||||||||||||||  | | ||||| || ||||   ||||||  |||||||| ||| |  ||||||||||||     
T  33914736 tgaagccaatttaagttgacttcaacttgaggaacctctatagtgagattggaaatcatagattggaaagattcccatgaagcagccgtctcttcatcac 33914637  T
Q  467 aagttattgtctttaagttctgaagattgacaactgaaaatggcaattc 515  Q
    |   |||   |||||| |||  |||||||||||||||||||||||||||    
T  33914636 a---tatcacctttaaattcgcaagattgacaactgaaaatggcaattc 33914591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 338 - 515
Target Start/End: Complemental strand, 13510 - 13333
Alignment:
Q  338 caaagaagaggtcttagcagatcatttattgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcatatgctggaaatc 437  Q
    |||| |||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  13510 caaataagaggtcttgggagatcatttactgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcataggctgaaaatc 13411  T
Q  438 ttcccatgtagctgatgtctcttcatcagaagttattgtctttaagttctgaagattgacaactgaaaatggcaattc 515  Q
    ||||||||  || | ||||||||||||  ||||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  13410 ttcccatgaggcagctgtctcttcatcgcaagttatcgtcttcaagttctgaagattgacaactgagaatggcaattc 13333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 325 - 509
Target Start/End: Original strand, 8275468 - 8275652
Alignment:
Q  325 tacaaaagtcattcaaagaagaggtcttagcagatcatttattgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagca 424  Q
    |||||||  |||||||||||| |||| ||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||     
T  8275468 tacaaaatccattcaaagaagcggtcgtagcagatcctttaatgatggcaatttaagttaacatcaacatgaggaacctctatcttcatactaggaagcg 8275567  T
Q  425 tatgctggaaatcttcccatgtagctgatgtctcttcatcagaagttattgtctttaagttctgaagattgacaactgaaaatgg 509  Q
    |||| |||||||||||||||||||| |  |||||||||||  | ||| | ||||| || ||||||||||||||| ||||||||||    
T  8275568 tatgatggaaatcttcccatgtagcagccgtctcttcatcgcaggttttcgtcttcaaattctgaagattgacatctgaaaatgg 8275652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 151 - 323
Target Start/End: Original strand, 8275222 - 8275392
Alignment:
Q  151 ttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnntttaaaattgaatttattgattgag 250  Q
    |||||||||||||| ||| ||||||| ||||||||| ||||||||| ||||| ||||||||||  |||       || |||||| ||| |||||||| ||    
T  8275222 ttggagaagcataggaggatttactagcaccttattatcatgtaaacaaatctatagaatgagtagataaaaa--ttaaaaatttaatctattgattaag 8275319  T
Q  251 aatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatact 323  Q
    |||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  8275320 aatagctaatacaaatcatgcatttatacaaaagaatttacaaaagattacaaaagaattttagttatatact 8275392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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