View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7999_high_2 (Length: 240)

Name: NF7999_high_2
Description: NF7999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7999_high_2
NF7999_high_2
[»] chr7 (21 HSPs)
chr7 (1-224)||(8538737-8538960)
chr7 (1-192)||(8582628-8582819)
chr7 (1-221)||(8546611-8546831)
chr7 (1-199)||(8572548-8572746)
chr7 (1-157)||(8577289-8577445)
chr7 (92-222)||(8568773-8568903)
chr7 (1-191)||(8591364-8591554)
chr7 (59-189)||(8635503-8635633)
chr7 (68-189)||(7876847-7876968)
chr7 (1-79)||(8560773-8560851)
chr7 (59-188)||(13332154-13332283)
chr7 (59-191)||(8602700-8602832)
chr7 (59-189)||(3148339-3148469)
chr7 (59-189)||(8647669-8647799)
chr7 (77-198)||(8610623-8610744)
chr7 (68-188)||(10493014-10493134)
chr7 (59-190)||(17261359-17261490)
chr7 (2-188)||(29576936-29577122)
chr7 (14-153)||(8660248-8660387)
chr7 (2-112)||(17269145-17269255)
chr7 (59-111)||(6790456-6790508)
[»] chr8 (1 HSPs)
chr8 (17-192)||(12529833-12530008)
[»] chr2 (5 HSPs)
chr2 (59-157)||(12257918-12258016)
chr2 (20-189)||(12244368-12244537)
chr2 (59-188)||(16656604-16656733)
chr2 (17-188)||(14705432-14705603)
chr2 (62-111)||(12000379-12000428)
[»] chr4 (1 HSPs)
chr4 (20-157)||(35133454-35133591)
[»] chr1 (2 HSPs)
chr1 (2-191)||(34465195-34465384)
chr1 (56-189)||(4677541-4677674)
[»] chr5 (1 HSPs)
chr5 (59-144)||(42554191-42554276)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8538960 - 8538737
Alignment:
Q  1 tgaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttct 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8538960 tgaccttggcacgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttct 8538861  T
Q  101 tgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggtaattcatttattc 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8538860 tgtgttggttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccaacaaacactgtctttggtaattcatttattc 8538761  T
Q  201 ttttgttccagcactgtttaatct 224  Q
    ||||||||||||||||||||||||    
T  8538760 ttttgttccagcactgtttaatct 8538737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8582819 - 8582628
Alignment:
Q  1 tgaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttct 100  Q
    ||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  8582819 tgaccttggtacaacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggaaatcatacacaatgatcaaggaaacaaaacaacaccttct 8582720  T
Q  101 tgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggtaattc 192  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||||| | |||||| ||| |||||||||    
T  8582719 tgtgttgcttttactaattctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaacccaaccaacactatctatggtaattc 8582628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8546831 - 8546611
Alignment:
Q  1 tgaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttct 100  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||    
T  8546831 tgaccttggcacgacttactcatgtgttggagtatggcaggagcagaacgatcgtgtggaaatcattcacaatgatcaaggaaacaaaacaacaccttct 8546732  T
Q  101 tgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggtaattcatttattc 200  Q
    ||||||||||| |  ||||| ||| |  ||||||||||||||||||||||||| ||||| |||||||||   |||||||| |||||||||| | ||||||    
T  8546731 tgtgttgctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcaggcttcttctaacccaatcaacactgtatttggtaatttacttattc 8546632  T
Q  201 ttttgttccagcactgtttaa 221  Q
    |||||||||||||||||||||    
T  8546631 ttttgttccagcactgtttaa 8546611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 8572746 - 8572548
Alignment:
Q  1 tgaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttct 100  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||| || |||||||||| ||| || || |||    
T  8572746 tgaccttggcacgacttactcatgtgttggagtgtggcaggagcaaaatgatcgtgttgaaatcatacacaatgaccaaggaaacagaacaactccctct 8572647  T
Q  101 tgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggtaattcatttatt 199  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |  |||| ||| | || ||| ||||||||||||| ||||||    
T  8572646 tgtgttgcttttactaattctcaaagattgatcggtgatgctgccaaaaatcaagctgctactaatccatccaatactatctttggtaattcttttatt 8572548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 8577445 - 8577289
Alignment:
Q  1 tgaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttct 100  Q
    ||||||||||| ||| ||||||||||||||||| ||||| || |||||||||||||| || || |||||||| ||||||||||||| |||||| ||||||    
T  8577445 tgaccttggcacgacttactcatgtgttggagtatggcatgaacaaaacgatcgtgtagaaattatacacaatgatcaaggaaacagaaccactccttct 8577346  T
Q  101 tgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagct 157  Q
    |||||||||||||  ||||||||| |||||||||| |||||||||||||||||||||    
T  8577345 tgtgttgcttttaccaattctcaaagattgattggcgatgctgccaaaaatcaagct 8577289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 8568903 - 8568773
Alignment:
Q  92 acaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggtaatt 191  Q
    |||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||||||| | ||||| ||| | ||||||  |||||||||||    
T  8568903 acaccttcttgtgttgctttcactaaatctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaatccaaccaacactacctttggtaatt 8568804  T
Q  192 catttattcttttgttccagcactgtttaat 222  Q
    ||||| |||||||  |||||||  |||||||    
T  8568803 cattttttctttttgtccagcatagtttaat 8568773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8591554 - 8591364
Alignment:
Q  1 tgaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttct 100  Q
    |||||||||||  || || |||||||| | ||| |||||||| |||||| ||   |  ||||| || ||||| ||||||||||| | ||  |||||||||    
T  8591554 tgaccttggcacaacgtattcatgtgtagcagtttggcaggaccaaaacaatacagcagagattattcacaatgatcaaggaaatagaattacaccttct 8591455  T
Q  101 tgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggtaatt 191  Q
    | ||||||||||| ||||  |||| | ||||||||||||||||| ||||| || ||| | ||||||||||||||||||||||| |||||||    
T  8591454 tttgttgcttttactaatgatcaaaggttgattggtgatgctgcaaaaaaccaggctgcttctaacccagcaaacactgtcttcggtaatt 8591364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 8635503 - 8635633
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagctt 158  Q
    |||||||| ||||| || ||||| |||| || ||||||||||||||||||||| | | |  | ||| | ||||||||||||||||||||||| || ||||    
T  8635503 gagatcatccacaatgagcaagggaacagaatcacaccttcttgtgttgctttcactgacgcacaaaggttgattggtgatgctgccaaaaaccaggctt 8635602  T
Q  159 cctctaacccagcaaacactgtctttggtaa 189  Q
    ||||||||||| | || ||||||||||||||    
T  8635603 cctctaacccatccaatactgtctttggtaa 8635633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 7876847 - 7876968
Alignment:
Q  68 cacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacc 167  Q
    ||||| || ||||| |||| ||| |||||||||| ||||||||| |  |||  |||| | |||||||||||||||||||||||||| ||| |||||||||    
T  7876847 cacaatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattggtgatgctgccaaaaatcaggctgcctctaacc 7876946  T
Q  168 cagcaaacactgtctttggtaa 189  Q
    || | |||||||||||||||||    
T  7876947 catccaacactgtctttggtaa 7876968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 8560851 - 8560773
Alignment:
Q  1 tgaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaa 79  Q
    ||||||||| |  |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||    
T  8560851 tgaccttggaacaacctactcatgtgttggagtatggcaggagcaaaacaatcgtgtggaaatcatacacaatgatcaa 8560773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 13332154 - 13332283
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagctt 158  Q
    ||||| || ||||| ||||||||||| | ||| |||||||||| ||||||||| |  |||  |||| |||||||||||||||||||||| |||||| ||     
T  13332154 gagattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaagattgattggtgatgctgccaagaatcaatctg 13332253  T
Q  159 cctctaacccagcaaacactgtctttggta 188  Q
    || ||||||| | ||||||| |||||||||    
T  13332254 ccactaaccctgaaaacactatctttggta 13332283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 8602832 - 8602700
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagctt 158  Q
    ||||| || ||||| ||||||||||||| ||| || ||||||| ||||||||||| | ||  | || | ||||| |||||||||||||||||||| |||     
T  8602832 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgataaaaggttgatcggtgatgctgccaaaaatcaggctg 8602733  T
Q  159 cctctaacccagcaaacactgtctttggtaatt 191  Q
    | ||||||||||  |||||| ||||||||||||    
T  8602732 cttctaacccagtcaacactatctttggtaatt 8602700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 3148469 - 3148339
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagctt 158  Q
    ||||| || ||||| || ||||| ||||||||||||||||||| ||||||||| | | ||  |||| | ||| ||||||||||||| || |||||||||     
T  3148469 gagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgctgctaagaatcaagctc 3148370  T
Q  159 cctctaacccagcaaacactgtctttggtaa 189  Q
    || | ||||| | ||||||||| ||||||||    
T  3148369 ccacaaaccctgaaaacactgtttttggtaa 3148339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 8647799 - 8647669
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagctt 158  Q
    ||||| || ||||| ||||||||||||| ||| |||||||||| ||||||||| |   ||  |||| | |||||||||||||| || |||||||| |||     
T  8647799 gagattattcacaatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatcaggctg 8647700  T
Q  159 cctctaacccagcaaacactgtctttggtaa 189  Q
    | ||||||||  | |||||||||||||||||    
T  8647699 cttctaaccctaccaacactgtctttggtaa 8647669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 8610744 - 8610623
Alignment:
Q  77 caaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaaca 176  Q
    |||||||||| |||||| ||||||| |||||||||   |  |  |||| | ||||| ||||||||||| |||||||||||| | || |||||||| ||||    
T  8610744 caaggaaacagaaccactccttcttttgttgctttctctggtgatcaaaggttgataggtgatgctgctaaaaatcaagctgcttcaaacccagctaaca 8610645  T
Q  177 ctgtctttggtaattcatttat 198  Q
    | ||||||||||| | ||||||    
T  8610644 cagtctttggtaactaatttat 8610623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 188
Target Start/End: Original strand, 10493014 - 10493134
Alignment:
Q  68 cacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacc 167  Q
    ||||| ||||||||||| | ||| |||||||||| ||||||||| |  |||  |||| | ||||| ||||||||||| || |||||| || || ||||||    
T  10493014 cacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgctaagaatcaatctgccactaacc 10493113  T
Q  168 cagcaaacactgtctttggta 188  Q
    | | |||||| ||||||||||    
T  10493114 ctgaaaacaccgtctttggta 10493134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 17261490 - 17261359
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagctt 158  Q
    |||||||| ||||| ||||||||||||||||  || ||||||| ||||||||||  |||   | || | ||||| |||||||| || || |||||||||     
T  17261490 gagatcattcacaatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgccgctaagaatcaagctg 17261391  T
Q  159 cctctaacccagcaaacactgtctttggtaat 190  Q
    ||   ||||||| |||||| ||||||||||||    
T  17261390 ccataaacccagaaaacaccgtctttggtaat 17261359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 29576936 - 29577122
Alignment:
Q  2 gaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttctt 101  Q
    |||||||||| |||||| ||||| || | ||| |||||| |||  ||| |||| |  |||||||| ||||| |||||||| || | |||||||||||||     
T  29576936 gaccttggcacgacctattcatgcgtagcagtttggcagcagcgtaacaatcgagctgagatcatccacaatgatcaaggcaatagaaccacaccttctg 29577035  T
Q  102 gtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggta 188  Q
     ||| ||||| | | |||| | | | || |||||| ||||||| |||||||| ||| |||| |||||| | |||||| |||| ||||    
T  29577036 ttgtagctttcactgattcactaaggttaattggtaatgctgctaaaaatcaggctgcctcaaacccaaccaacactatcttcggta 29577122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 8660387 - 8660248
Alignment:
Q  14 acctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgctttta 113  Q
    ||||| || |||||||  ||||||| |||| |  || |||| || ||||||||  ||||||| |||||||||||||| |||||||| | ||||||||| |    
T  8660387 acctattcgtgtgttgctgtgtggctggagaatcacaatcgagtcgagatcatctacaacgaccaaggaaacaaaacaacaccttcatttgttgctttca 8660288  T
Q  114 gtaattctcaacgattgattggtgatgctgccaaaaatca 153  Q
     | |   |||| | ||||||||||||||||| || |||||    
T  8660287 ctgacgatcaaaggttgattggtgatgctgctaagaatca 8660248  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 17269255 - 17269145
Alignment:
Q  2 gaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttctt 101  Q
    |||||||| | ||| |||||||||||||  |||||||| ||  || ||| | | || ||||| |||||||| |||||||| |||||||| || || ||||    
T  17269255 gaccttgggacgacatactcatgtgttgctgtgtggcatgaagaacacggtagagttgagattatacacaatgatcaaggcaacaaaactactccgtctt 17269156  T
Q  102 gtgttgctttt 112  Q
     ||||||||||    
T  17269155 ttgttgctttt 17269145  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 6790508 - 6790456
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttt 111  Q
    ||||| || ||||| || ||||| ||||||||||||||||||| |||||||||    
T  6790508 gagattattcacaatgaccaaggtaacaaaaccacaccttcttttgttgcttt 6790456  T

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Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 12530008 - 12529833
Alignment:
Q  17 tactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagta 116  Q
    ||||||||||||||||| ||||| |||||||  ||||||||||| || || ||||| ||||||||||||||||| |||||||||||||||||||||| ||    
T  12530008 tactcatgtgttggagtatggcaagagcaaactgatcgtgtggaaataattcacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttttacta 12529909  T
Q  117 attctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggtaattc 192  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||||||||  | |||||| |||||||||||||    
T  12529908 attctcagagattgattggtcatgctgccaaaaatcaagcttcctctaaccccaccaacactatctttggtaattc 12529833  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 12257918 - 12258016
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagct 157  Q
    |||||||| ||||||||||||||||||| ||| || ||||||||||||||||||| |||   |||| | ||||||||||||||||| || |||||||||    
T  12257918 gagatcattcacaacgatcaaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatcaagct 12258016  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 12244368 - 12244537
Alignment:
Q  20 tcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaatt 119  Q
    |||||||||| ||| |||||||| ||| ||  |||||| || ||||| ||||||||||| || |||| ||| |||||||||||||||||||| | | |      
T  12244368 tcatgtgttgcagtatggcaggaacaacactctcgtgttgaaatcattcacaacgatcagggcaacagaacaacaccttcttgtgttgctttcactgaag 12244467  T
Q  120 ctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggtaa 189  Q
     |||| | || |||||||||||||| |||||||||||| |  ||||| |   ||||||||||||||||||    
T  12244468 atcaaaggtttattggtgatgctgctaaaaatcaagctgctgctaactctcaaaacactgtctttggtaa 12244537  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 16656604 - 16656733
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagctt 158  Q
    |||||||||||||| || || ||||||| ||| |||||||||| ||||||||| | | ||  |||| | ||||| ||||||||||| || ||||||| |     
T  16656604 gagatcatacacaatgaccagggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgctgctaagaatcaagttg 16656703  T
Q  159 cctctaacccagcaaacactgtctttggta 188  Q
    || ||||||||  ||||||  |||||||||    
T  16656704 ccgctaacccacaaaacaccatctttggta 16656733  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 14705603 - 14705432
Alignment:
Q  17 tactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagta 116  Q
    ||||||||||||| ||| |||||||| ||| |  |||| || || ||||| |||||||||||||| || | ||| || ||||||| ||||||||| |       
T  14705603 tactcatgtgttgcagtatggcaggaacaacattatcgagttgaaatcattcacaacgatcaaggcaatagaacaactccttcttttgttgctttcaccg 14705504  T
Q  117 attctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggta 188  Q
    |   ||| || ||||||||||||||||| || ||||||||| |  | |||||   |||||||||||||||||    
T  14705503 aaaatcagcggttgattggtgatgctgctaagaatcaagctgctgccaaccctcgaaacactgtctttggta 14705432  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 12000428 - 12000379
Alignment:
Q  62 atcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttt 111  Q
    ||||| |||||||||||||| |||||||  ||||||||||||||||||||    
T  12000428 atcattcacaacgatcaaggcaacaaaataacaccttcttgtgttgcttt 12000379  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 35133591 - 35133454
Alignment:
Q  20 tcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaatt 119  Q
    |||||||||| ||| ||||| || ||| || |||| || || ||||| |||||||||||| | |||||||| |||||||||||| ||||||| | |||      
T  35133591 tcatgtgttgcagtatggcaagaacaacactatcgagtcgaaatcattcacaacgatcaaagcaacaaaacaacaccttcttgtattgctttcactaagg 35133492  T
Q  120 ctcaacgattgattggtgatgctgccaaaaatcaagct 157  Q
     |||| | ||||| ||||||||||| || |||||||||    
T  35133491 atcaaaggttgatcggtgatgctgctaagaatcaagct 35133454  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 34465195 - 34465384
Alignment:
Q  2 gaccttggcatgacctactcatgtgttggagtgtggcaggagcaaaacgatcgtgtggagatcatacacaacgatcaaggaaacaaaaccacaccttctt 101  Q
    ||||||||||  |||||||||||||||| ||| |||||||| ||| ||  | | || ||||| ||  |||| || ||||| |||| ||||||||||||||    
T  34465195 gaccttggcacaacctactcatgtgttgcagtatggcaggaacaacacagtagagtagagattattgacaatgaccaaggtaacacaaccacaccttctt 34465294  T
Q  102 gtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagcttcctctaacccagcaaacactgtctttggtaatt 191  Q
     ||||||||||| | ||  |||| ||||||| ||| ||||||| || |||||| || |  | ||||||   |||||||| ||||||||||    
T  34465295 ttgttgcttttactcatgatcaaagattgatcggtaatgctgctaagaatcaaactgctaccaacccacagaacactgtttttggtaatt 34465384  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 4677541 - 4677674
Alignment:
Q  56 gtggagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgccaaaaatcaag 155  Q
    |||||||| ||  |||| || ||||| |||||||| |||||||||| ||||||||||| | ||  |||| | ||||||||| ||||||| || ||||||     
T  4677541 gtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgctgctaagaatcaat 4677640  T
Q  156 cttcctctaacccagcaaacactgtctttggtaa 189  Q
    || || | ||| | | ||||||||||||||||||    
T  4677641 ctgccaccaactctgaaaacactgtctttggtaa 4677674  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 42554191 - 42554276
Alignment:
Q  59 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttgcttttagtaattctcaacgattgattggtgatgctgc 144  Q
    ||||| || ||||| |||||||| |||||||| |||||||||| ||||||||||| | ||  | || | |||||||||||||||||    
T  42554191 gagattattcacaatgatcaaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgc 42554276  T

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