View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8000_high_1 (Length: 246)
Name: NF8000_high_1
Description: NF8000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8000_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 30324478 - 30324705
Alignment:
| Q |
1 |
tcttggatcttattggacnnnnnnnncaagacaaattttgattattaaatgtttgcttaaacggaacatagcaatagccaaataaagccagaaggatgca |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30324478 |
tcttggatcttattggacaaaaaaaacaagacaaattttgattattaaatgtttgcttaaacggaacatagcaatagccaaataaagccagaaggatgca |
30324577 |
T |
|
| Q |
101 |
caacatgctaaaaactatgggattgtgtggcggtttcattcaaggagcttttttcccctttctttcatgagaaagtaaggattaaacgaatgacatcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30324578 |
caacatgctaaaaactatgggattgtgtggtggtttcattcaaggagcttttttcccgtttctttcatgagaaagtaaggattaaacgaatgacatcaaa |
30324677 |
T |
|
| Q |
201 |
aaatgaagaaaacaattcgtcgtaatga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30324678 |
aaatgaagaaaacaattcgtcgtaatga |
30324705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 367190 - 367038
Alignment:
| Q |
74 |
atagccaaataaagccagaaggatgcacaacatgctaaaaactatgggattgtgtggcggtttcattcaaggagcttttttcccctttctttcatgagaa |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
367190 |
atagccaaataaagccagaaggatgcacaacatgctaaaaactatgggattgtg--gtggtttcatacaaggagtttttttcccctttctttcatgagaa |
367093 |
T |
|
| Q |
174 |
agtaaggattaaacgaatgacatcaaaaaatgaagaaaacaattcgtcgtaatga |
228 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
367092 |
agtaaggattaagcgaatgacatcaaaaaatgaagaaagcaattcgtcgtaatga |
367038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 23686579 - 23686424
Alignment:
| Q |
74 |
atagccaaataaagccagaaggatgcacaacatgctaaaaactatgggattgtgtggcggtttcattcaaggagcttttttc---ccctttctttcatga |
170 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||| |||||| ||||||||||||||| |
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|
| T |
23686579 |
atagccaaataaggccagaaggatgcacaacatgctaaaaactatgagattgtg--gtggtttcatacaaggagtttttttttttccctttctttcatga |
23686482 |
T |
|
| Q |
171 |
gaaagtaaggattaaacgaatgacatcaaaaaatgaagaaaacaattcgtcgtaatga |
228 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
23686481 |
gaaagtatggattaagcgaatgacatcagaaaatgaagaaaacaattcatcgtaatga |
23686424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 22541866 - 22541714
Alignment:
| Q |
74 |
atagccaaataaagccagaaggatgcacaacatgctaaaaactatgggattgtgtggcggtttcattcaaggagcttttttcccctttctttcatgagaa |
173 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
22541866 |
atagccaaataaggccagaaggatgcacaacatgctaaaaactatgggattgtg--gtggtttcatacaaggagtttttttcccctttctttcatgagaa |
22541769 |
T |
|
| Q |
174 |
agtaaggattaaacgaatgacatcaaaaaatgaagaaaacaattcgtcgtaatga |
228 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
22541768 |
agtaaggattaagcgaatgacatcaaaaaatgaagaaaacaattcatcgtaatga |
22541714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 15524683 - 15524533
Alignment:
| Q |
74 |
atagccaaataaagccagaaggatgcacaacatgctaaaaactatgggattgtgtggcggtttcattcaaggagcttttttcccctttctttcatgagaa |
173 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||| ||||| |||||||||||||||||| |
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|
| T |
15524683 |
atagccaaataaggccagaaggatgcacaacatgctaaaaactatgggactgtg--gtggtttcatacaaggagtttttt--ccctttctttcatgagaa |
15524588 |
T |
|
| Q |
174 |
agtaaggattaaacgaatgacatcaaaaaatgaagaaaacaattcgtcgtaatga |
228 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15524587 |
agtaaggattaagcgaatgacatcaaaaaatgaagaaaacaattcatcgtaatga |
15524533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 19099147 - 19099255
Alignment:
| Q |
74 |
atagccaaataaagccagaaggatgcacaacatgctaaaaactatgggattgtgtggcggtttcattcaaggagcttttttcccctttctttcatgagaa |
173 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
19099147 |
atagccaaataaaaccagaaggatgcacaacatgctaaaaactatgggat--tgtggtggtttcatacaaggag-ttttttcccctttctttcatgagaa |
19099243 |
T |
|
| Q |
174 |
agtaaggattaa |
185 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19099244 |
agtaaggattaa |
19099255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 19100384 - 19100440
Alignment:
| Q |
172 |
aaagtaaggattaaacgaatgacatcaaaaaatgaagaaaacaattcgtcgtaatga |
228 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19100384 |
aaagtaaggattaagcgaatgacatcaaagaatgaagaaaacaattcgtcgtaatga |
19100440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 30170025 - 30170177
Alignment:
| Q |
74 |
atagccaaataaagccagaaggatgcacaacatgctaaaaactatgggattgtgtggcggtttcattcaaggagcttttttcccctttctttcatgagaa |
173 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||| |||||| |||||||||||||||||| |
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|
| T |
30170025 |
atagccaaataaatccagaagaatgcacaacatgctaaaaactatgggattgtg--gtggtttcatacaaggagttttttttccctttctttcatgagaa |
30170122 |
T |
|
| Q |
174 |
agtaaggattaaacgaatgacatcaaaaaatgaagaaaacaattcgtcgtaatga |
228 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30170123 |
agtaaggattaagcgaatgacatcaaaaaatgaagaaaacaattcgtcgtaatga |
30170177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 21988785 - 21988636
Alignment:
| Q |
78 |
ccaaataaagccagaaggatgcacaacatgctaaaaactatgggattgtgtggcggtttcattcaaggagctttttt-cccctttctttcatgagaaagt |
176 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||| |||||| |||||||||||||||||||||| |
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|
| T |
21988785 |
ccaaataaagctagaaggatgcacaccatgctaaaaactatgggattgtg--gtggtttcatacaaggagttttttttcccctttctttcatgagaaagt |
21988688 |
T |
|
| Q |
177 |
aaggattaaacgaatgacatcaaaaaatgaagaaaacaattcgtcgtaatga |
228 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
21988687 |
aaggattaagcgaatgacatctaaaaatgaagaaaacaattcgtcataatga |
21988636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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