View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8000_high_2 (Length: 242)
Name: NF8000_high_2
Description: NF8000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8000_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 46213243 - 46213438
Alignment:
| Q |
29 |
ctctctctctatatatcattttctcttttaaattccttcagtattcagctatacatcnnnnnnnccattgttatagctagctaagaattctatgccaccc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
46213243 |
ctctctctctatatatcattttctcttttaaattccttcagtattcagctatacatctttttttc-attgttatagcta----agaattctatgccaccc |
46213337 |
T |
|
| Q |
129 |
attttgtnnnnnnnnnnnnnnnnnnnnnnnnnatttgggtcttttgttcattcttaagtcctaattaatcatgtcaaccgatcaagtttcaccattctct |
228 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46213338 |
attttgtaatatattataatatagaatatataatttgggtcttttgttcattcttaaggcctaattaatcatgtcaaccgatcaagtttcaccattctct |
46213437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University