View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8000_high_3 (Length: 208)
Name: NF8000_high_3
Description: NF8000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8000_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 10072034 - 10071855
Alignment:
| Q |
16 |
aagaaccaacatcttgtttagtaccatgctagacaagaactagcacattgttgattctcataggaaaagttgtgttcacatcctgtttcttttaattttc |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10072034 |
aagaaccaacatcttgcttagtaccatgctagacaagaactagcacattgttgattctcataggaaaagttgtgttcacatcctgtttcttttaattttc |
10071935 |
T |
|
| Q |
116 |
tttttagctaaagaaagagaggatgattgctacacacacataatgtagctaaggtaataactaaagcaatgtcatttgtg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10071934 |
tttttagctaaagaaagagaggatgattgctacccacacataatgtagctaaggtaataactaaagcaatgtcatttgtg |
10071855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University