View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8001_low_2 (Length: 311)
Name: NF8001_low_2
Description: NF8001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8001_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 24509407 - 24509130
Alignment:
| Q |
14 |
aggaagtggtgttcaaatttttgttggtagcattagtttgataaaatccgccagggggatttagtactgtttgataggtcgctgttgcaacaagggtcgc |
113 |
Q |
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| T |
24509407 |
aggaagtggtgttcaaatttttgttggtagcattagtttgataaaatccgccagggggatttagtactgtttgataggtcgctgttgcaacgagggtcgc |
24509308 |
T |
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| Q |
114 |
aacaatcaaccaagtgttgcgttgctcctctaatatttcacttctaaagcgactaacataaattgtcactttattcataattgtggtatctgatcttagt |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24509307 |
aacaatcaaccaagtgctgcgttgctcctctaatatttcacttctaaagcgactaacataaattgtcactttattcataattgtggtatctgatcttagt |
24509208 |
T |
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| Q |
214 |
tgatttgcaagtgagggagcatcgacgacttgttcaccgtttcttgctccaacacttaacaatatcctcgcaacgtct |
291 |
Q |
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|||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
24509207 |
tgatttgcaagtaagggagcatcgacgacttcttcaccgtgtcttgctccaacacttaacaatatcctcgcaatgtct |
24509130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 27714345 - 27714274
Alignment:
| Q |
94 |
gctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgctcctctaatatttcacttctaaagcga |
165 |
Q |
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| T |
27714345 |
gctgttgcaacaagagtcgcaactatcatccaagtgttgcgttgctcctctaatacatcatttctaatgcga |
27714274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 29552871 - 29552745
Alignment:
| Q |
14 |
aggaagtggtgttcaaatttttgttggtagcattagtttgataaaatccgccagggggatttagtactgtttgataggtcgctgttgcaacaagggtcgc |
113 |
Q |
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| T |
29552871 |
aggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactgattgataggtggcagtcacaacaagggctgc |
29552772 |
T |
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| Q |
114 |
aacaatcaaccaagtgttgcgttgctc |
140 |
Q |
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||| |||||| |||||| |||||||| |
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| T |
29552771 |
aactatcaacatagtgttacgttgctc |
29552745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 30648930 - 30648800
Alignment:
| Q |
52 |
tgataaaatccgccagggggatttagtactgtttgataggtcgctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgctcctctaatattt |
151 |
Q |
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||||||| ||| ||||||||| | | | ||| ||||||| | || || |||||||| |||||||| |||||||||||||| |||||||||||| |||| | |
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| T |
30648930 |
tgataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctgatatat |
30648831 |
T |
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| Q |
152 |
cacttctaaagcgactaacataaattgtcac |
182 |
Q |
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| | ||||| |||| | | |||||||||||| |
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| T |
30648830 |
ctcctctaatgcgatttatataaattgtcac |
30648800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 26089232 - 26089181
Alignment:
| Q |
92 |
tcgctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgctcctc |
143 |
Q |
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|||| ||||||||||| |||||||| ||||||||| |||| ||||||||||| |
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| T |
26089232 |
tcgcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctcctc |
26089181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 4819923 - 4819858
Alignment:
| Q |
84 |
ttgataggtcgctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgctcctctaatat |
149 |
Q |
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|||| |||| || ||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |
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| T |
4819923 |
ttgaaaggtggcagttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctgatat |
4819858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 17292707 - 17292762
Alignment:
| Q |
84 |
ttgataggtcgctgttgcaacaagggtcgcaacaatcaaccaagtgttgcgttgct |
139 |
Q |
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||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
17292707 |
ttgataggtggctgttgcaacaagagtcgcaattatcaaccaagtgttgcgttgct |
17292762 |
T |
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