View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8001_low_3 (Length: 251)
Name: NF8001_low_3
Description: NF8001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8001_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 46983006 - 46982768
Alignment:
| Q |
1 |
acaatatatgttcatgtaatatcacaaacgacaactttatgtatcagcaaagttgaaaataatcttagtggtgcaatcataaagaagatgacattaatat |
100 |
Q |
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| T |
46983006 |
acaatgtatgttcatgtaatatcacaaacgacaactttatgtatcagcaaagttgaaaataatcttagtggtgcaatcataaagaagatgacattaatat |
46982907 |
T |
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| Q |
101 |
ttcagaaaagtttaaattcagcttactggtgcagtcatagaaaagatgtaaacagcaaaacactatattttagattgtatcatcaaaatgtggcatatga |
200 |
Q |
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| T |
46982906 |
ttcagaaaagtttaaattcagcttactggtgcagtcatagaaaagatgtaaacagcaaaacactatattttagattgtatcatcaaaatgtggcatatga |
46982807 |
T |
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| Q |
201 |
atggacgggggaccacaaatacctaattaataatgccta |
239 |
Q |
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| T |
46982806 |
atggacgggggaccacaaatacctaattaataatgccta |
46982768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 46983091 - 46983023
Alignment:
| Q |
52 |
gttgaaaataatcttagtggtgcaatcataaagaagatgacattaatatttcagaaaagtttaaattca |
120 |
Q |
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| T |
46983091 |
gttgaaattaatcttggtggtatagtcattaaaaagatgtcattaatatttcataaaagtttaatttca |
46983023 |
T |
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