View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8002_low_1 (Length: 475)
Name: NF8002_low_1
Description: NF8002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8002_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 10 - 458
Target Start/End: Complemental strand, 3102210 - 3101762
Alignment:
| Q |
10 |
aagaatatgctacaattccaagtgcattcaatgctagaaataatgaagaagaaggttttgccagcgataagggttcataagagatagagggtggcctctg |
109 |
Q |
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| T |
3102210 |
aagaaaatgctacaattccaagtgcattcaatgctagaaataatgaagaagaaggttttgccagcgataagggttcataagagatagagggtggcctctg |
3102111 |
T |
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| Q |
110 |
ttggctcacagagagcacccaaaccatggtggagtaagtaatggccgtaacagctcctatcagtgacagtcctgcaattgaattgaggtttggaagctga |
209 |
Q |
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| T |
3102110 |
ttggctcacagagagcacccaaaccatggtggagtaagtaatggccgtaacagctcctatcagtgacagtcctgcaattgaattgaggtttggaagctga |
3102011 |
T |
|
| Q |
210 |
gaaagaacaatagatagagaagtgaaaaccaggtaccactccactgtggttaaaggatttgaggtacatgttggaccacaaactatttgaaagaacagtt |
309 |
Q |
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| T |
3102010 |
gaaagaacaatagatagagaagtgaaaaccaggtaccactccactgtggttaaaggatttgaggtacatgttggaccacaaactatttgaaagaacagtt |
3101911 |
T |
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| Q |
310 |
tcatggtctcccctccaacaagaatcaaagctgttgcagttcctgctgataaataaactgttgggaaaagagctagccatactcctaatctttcccctgc |
409 |
Q |
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| T |
3101910 |
tcatggtctcccctccaacaagaatcaaagctgttgcagttcctgctgataaataaactgttgggaaaagagctagccatactcctaatctttcccctgc |
3101811 |
T |
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| Q |
410 |
aatacaaggtagaaattataaacgaaacattactacgccacaaagatag |
458 |
Q |
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| T |
3101810 |
aatacaaggtagaaattataaatgaaacattactacgccacaaagatag |
3101762 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 53775652 - 53775701
Alignment:
| Q |
161 |
agctcctatcagtgacagtcctgcaattgaattgaggtttggaagctgag |
210 |
Q |
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|||||||||||| || | |||||||||||||| |||||||||||||||| |
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| T |
53775652 |
agctcctatcagagaaacccctgcaattgaattaaggtttggaagctgag |
53775701 |
T |
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