View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8003_high_3 (Length: 458)
Name: NF8003_high_3
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8003_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 47 - 440
Target Start/End: Original strand, 52034802 - 52035206
Alignment:
| Q |
47 |
gagaagatggattttttcctagctaaggattatagtttttgaaagttataattatgcagaaattgatcacacggatgacatcctcccaattcatccatgt |
146 |
Q |
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| T |
52034802 |
gagaagatggattttttcctagctaaggattatagtttttgaaagttataattatgcagaaattgatcacacggatgacatcctcccaattcatccattt |
52034901 |
T |
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| Q |
147 |
cctcaatgttttgaaggaagtctgagaaaactgcatcaacttcccctggtgtgaaaggcaatgtcttgagcgataaaagtcctacaatattagtttgaat |
246 |
Q |
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| T |
52034902 |
cctcaatgttttgaaggaagtctgagaaaactgcatcaacttcccctggcgtgaaaggcaatgtcttgagcgataaaagtcctacaatattagtttgaat |
52035001 |
T |
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| Q |
247 |
ttgtcaactccgtcatgct------------cgccttgcccatccgatcatttcgcatcaaatgcactggatgccattataaagatatcaatcgatttgt |
334 |
Q |
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| T |
52035002 |
ttgtcaactccgtcatgctcctgcgtgaccccgccttgcccatccgatcatttcgcatcaaatgcactggatgccatt-taaagatatcaatcgatttgt |
52035100 |
T |
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| Q |
335 |
tcctgttgctgttcaacgaggacttgtgagtttcgtcttagatttgtccactacttacactcattttgaaatcacattaggtcatacatttgaaagtgtt |
434 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
52035101 |
tcctgttgctgttcaacgaggacttgtgagtttcatcttagatttgtccactacttacactcattttaaaatcacattaggtcctacacttgaaagtgtt |
52035200 |
T |
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| Q |
435 |
ttcagt |
440 |
Q |
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|||||| |
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| T |
52035201 |
ttcagt |
52035206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 12483623 - 12483651
Alignment:
| Q |
318 |
gatatcaatcgatttgttcctgttgctgt |
346 |
Q |
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| T |
12483623 |
gatatcaatcgatttgttcctgttgctgt |
12483651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 12485945 - 12485973
Alignment:
| Q |
318 |
gatatcaatcgatttgttcctgttgctgt |
346 |
Q |
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| T |
12485945 |
gatatcaatcgatttgttcctgttgctgt |
12485973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 12505053 - 12505081
Alignment:
| Q |
318 |
gatatcaatcgatttgttcctgttgctgt |
346 |
Q |
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| T |
12505053 |
gatatcaatcgatttgttcctgttgctgt |
12505081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 12507377 - 12507405
Alignment:
| Q |
318 |
gatatcaatcgatttgttcctgttgctgt |
346 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12507377 |
gatatcaatcgatttgttcctgttgctgt |
12507405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 12658263 - 12658291
Alignment:
| Q |
318 |
gatatcaatcgatttgttcctgttgctgt |
346 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12658263 |
gatatcaatcgatttgttcctgttgctgt |
12658291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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