View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8003_high_6 (Length: 383)
Name: NF8003_high_6
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8003_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 35965742 - 35965391
Alignment:
| Q |
11 |
gatggacatcaaa-gtgtggtgagaacgaagctataatttataatcgttgaaatctcattggtcagcaggaaggagatgacccaccaccctccaagttag |
109 |
Q |
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| T |
35965742 |
gatggacatcaaacgtgtggtgagaacgaagctataatttataatcgttgaaatctcattggtcagcaggaaggagatgacccaccaccctccaagttag |
35965643 |
T |
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| Q |
110 |
gtgttaataatcaattctaaatacaaaatcaattatactaataaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaa |
209 |
Q |
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| T |
35965642 |
gtgtttataatcaattctaaatacaaaatcaattatactaacaaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaa |
35965543 |
T |
|
| Q |
210 |
agtgtgtgtttattttcagctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtgaattgtttagttccatagactcataaacagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35965542 |
agtgtgtgtttattttcagctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtaaattgtttagttccatagactcataaacagt |
35965443 |
T |
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| Q |
310 |
ccaagttgttaaatatttggtcctctcccctattaaccgcgaatattcacca |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35965442 |
ccaagttgttaaatatttggtcctctcccctattaaccgcgaatattcacca |
35965391 |
T |
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