View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8003_low_1 (Length: 649)
Name: NF8003_low_1
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8003_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 30 - 543
Target Start/End: Complemental strand, 33949163 - 33948650
Alignment:
| Q |
30 |
caagatatggattatgaatgattaggaacgtgagaaagaccctattcccctagaaatctgatccatacgattatcagaccccaagcaacctaacaaacct |
129 |
Q |
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| T |
33949163 |
caagatatggattatgaatgattaggaacgtgagaaagaccctattcccctagaaatctgatccatacgattatcagaccccaagcaacctaacaaacct |
33949064 |
T |
|
| Q |
130 |
ctcttataaggcaagaatgttctcttcttcatctcctcagtaacagcccggtttattgtataatgaatttcatgagccgaaaccggtccacgccgcctcg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33949063 |
ctcttataaggcaagaatgttctcttcttcatctcctcagtaacagcccggtttattgtataatgaatttcatgagccgaaaccggtccacgccgcctcg |
33948964 |
T |
|
| Q |
230 |
aaaatgaaccggaactctcattagaccggaaactagaattcctaacttcatcttccacaacacttttcttagacaaagctgtgtactttctcaaaggatc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33948963 |
aaaatgaaccggaactctcattagaccggaaactagaattcctaacttcatcttccacaacacttttcttagacaaagctgtgtactttctcaaaggatc |
33948864 |
T |
|
| Q |
330 |
tttttcattagctcttccttcagaagcacttcgaaataaaagaaaatctcttatcttccattttctataacctttagtgaaagacaagaacgatttcacg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33948863 |
tttttcattagctcttccttcagaagcacttcgaaataaaagaaaatctcttatcttccattttctataacctttagtgaaagacaagaacgatttcacg |
33948764 |
T |
|
| Q |
430 |
ttgttacttgtggaagaagaaacagaaacatctttatcttctgagttttctatgatgtctgagactcttaagggagacaaagacctgcttcctttcctac |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33948763 |
ttgttacttgtggaagaagaaacagaaacatctttatcttctgagttttctatgatgtctgagactcttaagggagacaaagacctgcttcctttcctac |
33948664 |
T |
|
| Q |
530 |
cagaagatgttacc |
543 |
Q |
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| T |
33948663 |
cagaagatgttacc |
33948650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 588 - 632
Target Start/End: Complemental strand, 33948605 - 33948561
Alignment:
| Q |
588 |
aattgcagcttcaaatggattagaatctctctcagtattatcatg |
632 |
Q |
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| T |
33948605 |
aattgcagcttcaaatggattagaatctctctcagtattatcatg |
33948561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 12258388 - 12258281
Alignment:
| Q |
109 |
cccaagcaacctaacaaacctctcttataaggcaagaatgttctcttcttcatctcctcagtaacagcccggtttattgtataatgaatttcatgagccg |
208 |
Q |
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||||| ||||| ||||||||| ||||||||||| | ||| || |||||| ||||||| | |||||||||| | ||||||||| | |||||||||| |
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| T |
12258388 |
cccaaacaacccaacaaaccttgtttataaggcaacatagttttcctcttcaattcctcagaagcagcccggttcaatgtataatgcaactcatgagccg |
12258289 |
T |
|
| Q |
209 |
aaaccggt |
216 |
Q |
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|||||||| |
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| T |
12258288 |
aaaccggt |
12258281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 12258159 - 12258090
Alignment:
| Q |
341 |
ctcttccttcagaagcacttcgaaataaaagaaaatctcttatcttccattttctataacctttagtgaa |
410 |
Q |
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|||||||||| |||||||||||||||| ||||||||| | | ||||||||||||| ||||| ||||| |
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| T |
12258159 |
ctcttccttctgaagcacttcgaaatagtagaaaatctttgaatctccattttctatacccttttgtgaa |
12258090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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