View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8003_low_10 (Length: 352)
Name: NF8003_low_10
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8003_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 53789015 - 53788685
Alignment:
| Q |
15 |
tcagatacggaaatgttataagaatgtataattgtatatgtaatttattattagctatagcctatagtttgttgcaactagtggtattatgaaatgaatg |
114 |
Q |
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| T |
53789015 |
tcagatacg-aaatgttataagaatgtataattgtatatgtaatttattattagctatag-------tttgttgcgacttgtggtattatgaaatgaatg |
53788924 |
T |
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| Q |
115 |
agagaagtatattggaataatagaataaaaagaagacgacaatcaaatgacatagtatggtattgatgaatcatacaaaaaggcctagatgtgtgggtgg |
214 |
Q |
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| T |
53788923 |
agagaagtatagtggaataatagaataaaaagaagacgacaatcaaatgacatggtatggtattgatgaatcatacaaaaaggcctagatgtgtgggtgg |
53788824 |
T |
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| Q |
215 |
agcgaacgtgtaaggagattcaaaagtgttgggtcacgaggaggatgatcctccggactccccatcttgacacaaaggtggtatcttacatcatgattta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
53788823 |
agcgaacgtgtaaggagattcaaaagtgttgggtcacgaggaggataatcctccggactccccatctttttgcaaaggtggtatcttacatgatgattta |
53788724 |
T |
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| Q |
315 |
ataagaatttgatcggtt-tttgtgttgaaagtctttct |
352 |
Q |
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| T |
53788723 |
ataagaatttgatcggttctttgtgttgaaagtctttct |
53788685 |
T |
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