View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8003_low_11 (Length: 334)
Name: NF8003_low_11
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8003_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 2976093 - 2975787
Alignment:
| Q |
15 |
acatcatctagagcacaaaaatcaaaatataaacttcagatatattcttgggtttaatgtcatcaaaatcatcccatacattcaaatcttccgcaagcat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2976093 |
acatcatctagagcacaaaaatcaaaatataaacttcagatatattcttgggtttaatgtcatcaaaatcatcccatacattcaaatcttccgcaagcat |
2975994 |
T |
|
| Q |
115 |
agaactttctcaatagtcagtcaatataccatacaaaaacttgatagaacaatccatttaattaacagaagaaattaatcaaattgcacatcttaattcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2975993 |
agaactttctcaatagtcagtcaatataccatacaaaaacttgatagaacaatccatttaattaacagaagaaattaatcaaattgcacatcttgattcc |
2975894 |
T |
|
| Q |
215 |
ctcctagctctaacaaatctctaatcctaaagaatcatataaaaactcgattctctaatcctcatgacaccgccctatgttctatacatactagacagac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2975893 |
ctcctagctctaacaaatctctaatcctaaagaatcatataaaaactcgattctctaatcctcatgacaccgccctatgttctatacatactagacagac |
2975794 |
T |
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| Q |
315 |
atgatgt |
321 |
Q |
| |
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||||||| |
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| T |
2975793 |
atgatgt |
2975787 |
T |
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