View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8003_low_15 (Length: 251)

Name: NF8003_low_15
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8003_low_15
NF8003_low_15
[»] chr3 (14 HSPs)
chr3 (13-236)||(26715871-26716094)
chr3 (17-186)||(26739165-26739340)
chr3 (46-90)||(53508360-53508404)
chr3 (15-93)||(9797441-9797519)
chr3 (7-93)||(14859585-14859671)
chr3 (48-90)||(27856301-27856343)
chr3 (7-93)||(51923822-51923908)
chr3 (52-93)||(12050555-12050596)
chr3 (47-96)||(38142660-38142709)
chr3 (48-93)||(42460885-42460930)
chr3 (48-93)||(46220799-46220844)
chr3 (13-93)||(23799817-23799897)
chr3 (13-93)||(44805130-44805210)
chr3 (13-93)||(51303550-51303630)
[»] chr8 (15 HSPs)
chr8 (13-93)||(18890604-18890684)
chr8 (13-85)||(471079-471151)
chr8 (48-93)||(8867944-8867989)
chr8 (7-75)||(8443434-8443502)
chr8 (55-93)||(428996-429034)
chr8 (51-93)||(28086717-28086759)
chr8 (7-93)||(39657552-39657638)
chr8 (48-93)||(15344447-15344492)
chr8 (48-93)||(15433512-15433557)
chr8 (48-93)||(15524816-15524861)
chr8 (48-93)||(29617179-29617224)
chr8 (48-93)||(41896656-41896701)
chr8 (147-191)||(21238040-21238084)
chr8 (13-93)||(23230747-23230827)
chr8 (13-93)||(27110370-27110450)
[»] chr7 (7 HSPs)
chr7 (7-93)||(9450044-9450130)
chr7 (48-93)||(24069301-24069346)
chr7 (47-95)||(25068200-25068249)
chr7 (7-93)||(12141215-12141301)
chr7 (127-191)||(11654044-11654108)
chr7 (127-191)||(38880407-38880471)
chr7 (49-93)||(48316719-48316763)
[»] chr5 (6 HSPs)
chr5 (11-93)||(14082303-14082385)
chr5 (13-93)||(35920903-35920983)
chr5 (58-93)||(11192525-11192560)
chr5 (7-93)||(14211322-14211408)
chr5 (7-93)||(38597892-38597978)
chr5 (13-93)||(28540813-28540893)
[»] chr4 (17 HSPs)
chr4 (7-93)||(2520895-2520981)
chr4 (48-93)||(37465639-37465684)
chr4 (11-93)||(29960856-29960938)
chr4 (13-93)||(43853565-43853645)
chr4 (48-93)||(6155130-6155175)
chr4 (52-93)||(29120286-29120327)
chr4 (52-93)||(45418673-45418714)
chr4 (48-125)||(48351062-48351138)
chr4 (7-75)||(13634231-13634299)
chr4 (11-83)||(18935902-18935974)
chr4 (7-83)||(21686159-21686235)
chr4 (131-191)||(22038592-22038652)
chr4 (7-83)||(24098984-24099060)
chr4 (47-83)||(33332486-33332522)
chr4 (13-81)||(33921176-33921244)
chr4 (9-93)||(36194826-36194910)
chr4 (7-83)||(52944427-52944503)
[»] chr2 (7 HSPs)
chr2 (7-93)||(10237124-10237210)
chr2 (13-93)||(25508976-25509056)
chr2 (7-93)||(1421782-1421868)
chr2 (48-93)||(6358789-6358834)
chr2 (7-83)||(10929771-10929847)
chr2 (13-93)||(14955641-14955721)
chr2 (7-83)||(17994648-17994724)
[»] chr6 (5 HSPs)
chr6 (48-93)||(9380161-9380206)
chr6 (13-88)||(1523511-1523586)
chr6 (48-93)||(528257-528302)
chr6 (47-83)||(8102863-8102899)
chr6 (13-93)||(31296923-31297003)
[»] scaffold0049 (1 HSPs)
scaffold0049 (13-93)||(71207-71287)
[»] chr1 (6 HSPs)
chr1 (7-94)||(45415657-45415744)
chr1 (48-82)||(13075573-13075607)
chr1 (48-93)||(15492427-15492472)
chr1 (13-93)||(14872744-14872824)
chr1 (11-83)||(16262964-16263036)
chr1 (13-93)||(31984266-31984346)
[»] scaffold0888 (1 HSPs)
scaffold0888 (48-89)||(1589-1630)
[»] scaffold0064 (1 HSPs)
scaffold0064 (48-96)||(18986-19034)
[»] scaffold0017 (1 HSPs)
scaffold0017 (52-96)||(32651-32695)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 26716094 - 26715871
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtatacttgggtgtcgtaagttt 112  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  26716094 tcaacgttgcagatccggaatcataggtactataatgatttatattttatcatattatttgtaagcattttttcgttgtatacttgggtgtcgtgagttt 26715995  T
Q  113 gttgacagattcacattgatcatattattataattgatgtgttctatcaatttgaatgacggaacattgttttgtttttctnnnnnnncaaaattatttc 212  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||| |       ||||||||||||    
T  26715994 gttgacagattcacattgatcatattattgtaactgatgtgttctatcaatttgaatgaccgaatattgttttgtttttgtaaaaaaacaaaattatttc 26715895  T
Q  213 cgacaaattaatacaaggttgggt 236  Q
    ||||||||||||||||||||||||    
T  26715894 cgacaaattaatacaaggttgggt 26715871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 26739340 - 26739165
Alignment:
Q  17 cgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat-------acttgggtgtcgtaag 109  Q
    ||||||| |||  ||||| | |||| ||| || |||||||||||||| |||||||||||||||||||  ||||||||       ||||| ||||||||||    
T  26739340 cgttgcagatcaagaatcgtgggtattatgataatttagattttatcatattatttgtaagcattttggcgttgtatgctattaacttgagtgtcgtaag 26739241  T
Q  110 tttgttgacagattcacattgatcatattattataattgatgtgttctatcaatttgaatgacggaacattgttttg 186  Q
    |||||||||| ||||||||||||| ||||||| ||  |||||||||||||||||||| ||||||||| |||||||||    
T  26739240 tttgttgacatattcacattgatcgtattattgtatctgatgtgttctatcaatttg-atgacggaatattgttttg 26739165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 53508360 - 53508404
Alignment:
Q  46 aatgatttagattttatcgtattatttgtaagcattttttcgttg 90  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||||    
T  53508360 aatgatttagattttatcatattatttgtaggcattttgtcgttg 53508404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 9797519 - 9797441
Alignment:
Q  15 aacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||| |||||||| ||| |||| |  | |||||||  ||||||| ||||||||||| ||||||| |||||||||    
T  9797519 aacgttgcagatccggaagcatgggtatttaagtgatttatgttttatcatattatttgtaggcattttgtcgttgtat 9797441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 14859585 - 14859671
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||| ||| ||| |||| | |  | |||||||||||||||||||||| ||  ||||||| |||||||||    
T  14859585 tggacgtcaacgttgcagatccagaagcatgggtattttggtaatttagattttatcgtattattggttggcattttgtcgttgtat 14859671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 27856301 - 27856343
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttg 90  Q
    |||||||||||||||| ||||||||||| |||||||| |||||    
T  27856301 tgatttagattttatcatattatttgtaggcatttttccgttg 27856343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 51923822 - 51923908
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||| ||| ||| |||| | |  |||||||||||| ||| ||||||||||| |||||||  ||||||||    
T  51923822 tggacgtcaacgttgcagatccagaagcatgggtattctggtgatttagatttcatcatattatttgtaggcattttgccgttgtat 51923908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 12050596 - 12050555
Alignment:
Q  52 ttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||| ||||||| ||||||||||||||||||| |||||||||    
T  12050596 ttaggttttatcatattatttgtaagcattttgtcgttgtat 12050555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 38142660 - 38142709
Alignment:
Q  47 atgatttagattttatcgtattatttgtaagcattttttcgttgtatact 96  Q
    ||||||||||| ||||| ||||||||||| ||||||| | ||||||||||    
T  38142660 atgatttagatcttatcatattatttgtaggcattttattgttgtatact 38142709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 42460885 - 42460930
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||| ||||||| | |||||||    
T  42460885 tgatttagattttatcatattatttgtaggcattttgttgttgtat 42460930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 46220799 - 46220844
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||| |||||||  ||||||||    
T  46220799 tgatttagattttatcatattatttgtaggcattttaccgttgtat 46220844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 23799897 - 23799817
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| ||||| || |||  ||| |  ||||| |||||||||||| ||||||||||| |||||||  ||||||||    
T  23799897 tcaacgttgcagatccgaaaacatgagtatttcaatgacttagattttatcatattatttgtaggcattttgccgttgtat 23799817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 44805130 - 44805210
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||||  | ||| |||| |||  |||||||||||||||| |||| |||||| ||||||| || ||||||    
T  44805130 tcaacgttgcaaatccgagagcatgggtattatggtgatttagattttatcatattgtttgtaggcattttgtcattgtat 44805210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 51303630 - 51303550
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||| ||| ||| |||| | |  |||||||||||| ||| ||||||||||| |||||||  ||||||||    
T  51303630 tcaacgttgcagatccagaagcatgggtattctggtgatttagatttcatcatattatttgtaggcattttgccgttgtat 51303550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 18890684 - 18890604
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||| ||| |||||||| |||  |||||||||||||||| ||||||||||| ||||||| |||||||||    
T  18890684 tcaacgttgcagatccagaaacataggtattatggtgatttagattttatcatattatttgtaggcattttgtcgttgtat 18890604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 471151 - 471079
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcatttttt 85  Q
    ||||||||||| |||||||| ||| |||| | | ||||||||||||||||| ||||||||||| |||||||||    
T  471151 tcaacgttgcagatccggaagcatgggtattctgatgatttagattttatcatattatttgtaggcatttttt 471079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 8867944 - 8867989
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||    
T  8867944 tgatttagattttatcatattatttgtaggcattttgtcgttgtat 8867989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 8443502 - 8443434
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgta 75  Q
    ||||||||||||||||| |||||||| ||  |||| |||  |||||||||||| ||| |||||||||||    
T  8443502 tggacatcaacgttgcagatccggaagcactggtattatggtgatttagatttgatcatattatttgta 8443434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 429034 - 428996
Alignment:
Q  55 gattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  429034 gattttatcatattatttataagcattttttcgttgtat 428996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 28086759 - 28086717
Alignment:
Q  51 tttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||    
T  28086759 tttagattttatcatattatttgtaggcattttgtcgttgtat 28086717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 39657552 - 39657638
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||| ||| ||| |||| | |  |||||||||||| ||| ||||||||||| |||||||  ||||||||    
T  39657552 tggacgtcaacgttgcagatccagaagcatgggtattctggtgatttagatttcatcatattatttgtaggcattttgccgttgtat 39657638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 15344447 - 15344492
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||| ||||||||||| ||||||| |||||||||    
T  15344447 tgatttagattatatcatattatttgtaggcattttgtcgttgtat 15344492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 15433512 - 15433557
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||| ||||||||||| ||||||| |||||||||    
T  15433512 tgatttagattatatcatattatttgtaggcattttgtcgttgtat 15433557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 15524816 - 15524861
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||| ||||||||||| ||||||| |||||||||    
T  15524816 tgatttagattatatcatattatttgtaggcattttgtcgttgtat 15524861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 29617224 - 29617179
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||| ||||||| | |||||||    
T  29617224 tgatttagattttatcatattatttgtaggcattttgttgttgtat 29617179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 41896656 - 41896701
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||| ||| ||||||||||| ||||||| |||||||||    
T  41896656 tgatttagatttcatcatattatttgtaggcattttgtcgttgtat 41896701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 21238040 - 21238084
Alignment:
Q  147 tgatgtgttctatcaatttgaatgacggaacattgttttgttttt 191  Q
    |||||| ||||||||||||||||||  ||| ||||||||||||||    
T  21238040 tgatgtattctatcaatttgaatgaatgaatattgttttgttttt 21238084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 23230747 - 23230827
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||||||| ||| |||| |    ||| |||| ||||||| ||||||||||| ||||||| |||||||||    
T  23230747 tcaacgttgcagatccggaagcatgggtatttcggtgacttaggttttatcatattatttgtaggcattttgtcgttgtat 23230827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 27110450 - 27110370
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| ||| |||| |||  ||| | || ||| |||||||||||| |||||||||||  |||||| |||||||||    
T  27110450 tcaacgttgcagatctggaagcatgtgtattttagtgacttagattttatcatattatttgtagacattttatcgttgtat 27110370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 9450130 - 9450044
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||||||| ||| |||| | || |||||||| ||||||| ||||||||||| |||||||  ||||||||    
T  9450130 tggacgtcaacgttgcagatccggaagcatgggtattttagtgatttaggttttatcatattatttgtaggcattttgccgttgtat 9450044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 24069346 - 24069301
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||    
T  24069346 tgatttagattttatcatattatttgtaggcattttatcgttgtat 24069301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 25068200 - 25068249
Alignment:
Q  47 atgatttagattttatcgtattattt-gtaagcattttttcgttgtatac 95  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  25068200 atgatttagattttatcatattatttagtaagcattttgtcgttgtatac 25068249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 12141301 - 12141215
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||||||| ||| |||| |    ||| |||||||||||| ||||||||||| |||||||  ||||||||    
T  12141301 tggacgtcaacgttgcagatccggaagcatgggtatttcggtgacttagattttatcatattatttgtatgcattttgccgttgtat 12141215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 11654044 - 11654108
Alignment:
Q  127 attgatcatattattataattgatgtgttctatcaatttgaatgacggaacattgttttgttttt 191  Q
    |||||| || ||||| || ||||||| ||||||||||||||||||  ||| ||||||||| ||||    
T  11654044 attgatgatgttattgtatttgatgtattctatcaatttgaatgaatgaatattgttttgctttt 11654108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 38880471 - 38880407
Alignment:
Q  127 attgatcatattattataattgatgtgttctatcaatttgaatgacggaacattgttttgttttt 191  Q
    ||||||||| ||||||||  |||||| ||||| |||||||||| |  |||||| |||||||||||    
T  38880471 attgatcatgttattatatctgatgtattctaacaatttgaataaatgaacatcgttttgttttt 38880407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 48316763 - 48316719
Alignment:
Q  49 gatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||| ||||||| ||||||||||| ||||||| |||||||||    
T  48316763 gatttaggttttatcatattatttgtaggcattttgtcgttgtat 48316719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 14082385 - 14082303
Alignment:
Q  11 catcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||||| |||||||| ||| |||| |  ||||| |||| ||||||| ||||||||||| ||||||| |||||||||    
T  14082385 catcaacgttgcagatccggaagcatgggtatttcaatgacttaggttttatcatattatttgtaggcattttgtcgttgtat 14082303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 35920983 - 35920903
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||||||| ||| | || | || |||||| ||||||||| ||||||||||| ||||||| || ||||||    
T  35920983 tcaacgttgcagatccggaagcatcgatattctagtgattttgattttatcatattatttgtaggcattttgtcattgtat 35920903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 11192525 - 11192560
Alignment:
Q  58 tttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||||||||||||| |||||||||    
T  11192525 tttatcgtattatttgtaagcattttgtcgttgtat 11192560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 14211322 - 14211408
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||| ||| ||| |||| | |  |||||||||||| ||| ||||||||||| ||||||||  |||||||    
T  14211322 tggacgtcaacgttgcagatccagaagcatgggtattctggtgatttagatttcatcatattatttgtaggcatttttctgttgtat 14211408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 38597892 - 38597978
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||||||| ||| |||| |  | ||| |||| ||||||| ||||||||||| |||||||  ||||||||    
T  38597892 tggacgtcaacgttgcagatccggaagcatgggtatttcagtgacttaggttttatcatattatttgtaggcattttgccgttgtat 38597978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 28540893 - 28540813
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||| ||| ||| |||| | |  |||||||||||| ||| |||||||||||  ||||||| ||||||||    
T  28540893 tcaacgttgcagatccagaagcatgggtattttggtgatttagatttcatcatattatttgtagacatttttccgttgtat 28540813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 2520895 - 2520981
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||||||| ||| |||| |    |||||||||||||||||||||||||||| |||||||  ||||||||    
T  2520895 tggacgtcaacgttgcagatccggaagcatgggtatttcggtgatttagattttatcgtattatttgtaggcattttgccgttgtat 2520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 37465639 - 37465684
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||    
T  37465639 tgatttagattttatcatattatttgtaagcattttgtcgttgtat 37465684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 29960938 - 29960856
Alignment:
Q  11 catcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||||| |||||||| ||||  || | || |||||||||||||||| || |||||||| |||||||  ||||||||    
T  29960938 catcaacgttgcagatccggaaacataaatattttagtgatttagattttatcatactatttgtaggcattttgccgttgtat 29960856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 43853565 - 43853645
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| || ||||| |||  ||| ||  ||||||||||||||||| |||||||||| |||||||| | |||||||    
T  43853565 tcaacgttgcagattcggaagcatgcgtattaagatgatttagattttatcatattatttgtcagcattttgttgttgtat 43853645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 6155175 - 6155130
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||| ||||||||||| ||||||| |||||||||    
T  6155175 tgatttagattctatcatattatttgtaggcattttgtcgttgtat 6155130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 29120327 - 29120286
Alignment:
Q  52 ttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||| ||||||||||| ||||||| |||||||||    
T  29120327 ttagattttatcatattatttgtaggcattttgtcgttgtat 29120286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 45418673 - 45418714
Alignment:
Q  52 ttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||| ||||||||||| ||||||| |||||||||    
T  45418673 ttagattttatcatattatttgtaggcattttgtcgttgtat 45418714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 48351138 - 48351062
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtatacttgggtgtcgtaagtttgttgacagattca 125  Q
    ||||||||||| |||| | ||||||||| ||||||| ||||||||| ||||| ||| || |||||||| | |||||||    
T  48351138 tgatttagattgtatcatgttatttgtatgcattttgtcgttgtat-cttggatgttgtgagtttgttcaaagattca 48351062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 13634231 - 13634299
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgta 75  Q
    ||||| ||||||||||| |||||||| ||| |||| |  | |||||||| ||||||| |||||||||||    
T  13634231 tggacgtcaacgttgcagatccggaaacatgggtatttcagtgatttaggttttatcttattatttgta 13634299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 18935902 - 18935974
Alignment:
Q  11 catcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcatttt 83  Q
    ||||||||||||| ||||  || |||||||| | |  |||||||||||| ||| ||||||||||| |||||||    
T  18935902 catcaacgttgcagatccaaaagcataggtattctggtgatttagatttcatcatattatttgtaggcatttt 18935974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 21686235 - 21686159
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcatttt 83  Q
    ||||| ||||||||||| |||||||| |||  ||| | |  |||||||| ||||||| ||||||||||| |||||||    
T  21686235 tggacgtcaacgttgcagatccggaagcatgagtattttggtgatttaggttttatcatattatttgtaggcatttt 21686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 22038652 - 22038592
Alignment:
Q  131 atcatattattataattgatgtgttctatcaatttgaatgacggaacattgttttgttttt 191  Q
    ||||| ||||| || ||||||| |||||||||||| ||| |||||| || |||||||||||    
T  22038652 atcatgttattgtatttgatgtattctatcaatttaaattacggaatatcgttttgttttt 22038592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 24099060 - 24098984
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcatttt 83  Q
    ||||| ||||||||||| |||||||| ||| |||| |  | ||| |||| ||||||| ||||||||||| |||||||    
T  24099060 tggacgtcaacgttgcagatccggaaacatgggtatttcagtgacttaggttttatcatattatttgtaggcatttt 24098984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 33332522 - 33332486
Alignment:
Q  47 atgatttagattttatcgtattatttgtaagcatttt 83  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  33332522 atgatttagattttatcatattatttgtatgcatttt 33332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 33921176 - 33921244
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcatt 81  Q
    ||||||||||| |||||||| ||| |||| |  | ||| |||||||||||| ||||||||||| |||||    
T  33921176 tcaacgttgcagatccggaagcatgggtatttcagtgacttagattttatcatattatttgtaggcatt 33921244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 36194826 - 36194910
Alignment:
Q  9 gacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||| |||||| |||| ||| ||| |||| | |  |||||||||||| ||| ||||||||||| |||||||  ||||||||    
T  36194826 gacatcaaagttgcagatccagaaacatgggtattctggtgatttagatttcatcatattatttgtaggcattttgccgttgtat 36194910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 52944427 - 52944503
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcatttt 83  Q
    ||||| ||||||||||| |||||||| ||| |||| | |  |||||||||||| ||| |||| |||||| |||||||    
T  52944427 tggacgtcaacgttgcagatccggaagcatgggtattctggtgatttagatttcatcatattttttgtaggcatttt 52944503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 10237210 - 10237124
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||| ||| ||| |||| | | ||||||||||||| ||| ||||||||||| ||||||| |||||||||    
T  10237210 tggacgtcaacgttgcagatccagaagcatgggtattctgatgatttagatttcatcatattatttgtaggcattttgtcgttgtat 10237124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 25509056 - 25508976
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||||||| ||| |||| |   |||| |||||||||||||||||||||||| |||||||  ||||||||    
T  25509056 tcaacgttgcaaatccggaaacatgggtatttcgatgacttagattttatcgtattatttgtaggcattttgccgttgtat 25508976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 1421782 - 1421868
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||| ||||||||||| |||||||| ||| |||| |    |||||||| ||||||| ||||||||||| ||||||| |||||||||    
T  1421782 tggacgtcaacgttgcagatccggaagcatgggtatttcggtgatttaggttttatcatattatttgtaggcattttgtcgttgtat 1421868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 6358834 - 6358789
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||| | ||||| |||||||||    
T  6358834 tgatttagattttatcatattatttgtacgtattttgtcgttgtat 6358789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 10929771 - 10929847
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcatttt 83  Q
    ||||||||||||||||| |||||||| |||  ||| | |  ||||||| |||||||| |||||||| || |||||||    
T  10929771 tggacatcaacgttgcagatccggaagcatgtgtattctggtgatttaaattttatcatattatttataggcatttt 10929847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 14955641 - 14955721
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||| ||| |||  ||| | | ||||||||||||||||| |||||||||||  |||||| || ||||||    
T  14955641 tcaacgttgcagatccagaaacatgtgtattctgatgatttagattttatcatattatttgtagacattttatcattgtat 14955721  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 17994724 - 17994648
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcatttt 83  Q
    ||||| ||||||||||| |||||||| |||||||| |    ||| ||| |||||||| ||||||||||| |||||||    
T  17994724 tggacgtcaacgttgcacatccggaaccataggtatttcggtgacttaaattttatcatattatttgtaggcatttt 17994648  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 9380161 - 9380206
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||    
T  9380161 tgatttagattttatcatattatttgtatgcattttgtcgttgtat 9380206  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 1523511 - 1523586
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgt 88  Q
    ||||||||||| |||| ||| ||| |||| | |  |||||||||||||||| ||||||||||| ||||||| ||||    
T  1523511 tcaacgttgcagatccagaagcatgggtattctggtgatttagattttatcatattatttgtaggcattttgtcgt 1523586  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 528302 - 528257
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||| | ||||| |||||||||    
T  528302 tgatttagattttatcatattatttgtaggtattttgtcgttgtat 528257  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 8102863 - 8102899
Alignment:
Q  47 atgatttagattttatcgtattatttgtaagcatttt 83  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  8102863 atgatttagattttatcatattatttgtaggcatttt 8102899  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 31296923 - 31297003
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||||||| |||  ||| | |  ||||||| |||||||| |||| |||||| ||||||| |||||||||    
T  31296923 tcaacgttgcagatccggaagcatgagtattctggtgatttatattttatcatattgtttgtaggcattttgtcgttgtat 31297003  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 71287 - 71207
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||||||| ||| |||| | | |||| |||||||||||  ||||||||||| ||||||| | |||||||    
T  71287 tcaacgttgcagatccggaagcatgggtattttgatgacttagattttattatattatttgtaggcattttgttgttgtat 71207  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 45415657 - 45415744
Alignment:
Q  7 tggacatcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtata 94  Q
    ||||| ||||||||||| |||||||| |||||||| |    ||| |||| ||||||| ||||||||||| |||||||  |||||||||    
T  45415657 tggacgtcaacgttgcagatccggaagcataggtatttcggtgacttaggttttatcatattatttgtaggcattttgccgttgtata 45415744  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 13075607 - 13075573
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattt 82  Q
    |||||||||||||||| ||||||||||||||||||    
T  13075607 tgatttagattttatcatattatttgtaagcattt 13075573  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 15492427 - 15492472
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    |||||||||||||||| ||||||||||| |||||||  ||||||||    
T  15492427 tgatttagattttatcatattatttgtatgcattttaccgttgtat 15492472  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 14872744 - 14872824
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||||||| ||| |||| | |  ||| |||| ||||||| ||||||||||| |||||||  ||||||||    
T  14872744 tcaacgttgcagatccggaagcatgggtattttggtgacttaggttttatcatattatttgtaggcattttgccgttgtat 14872824  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 16262964 - 16263036
Alignment:
Q  11 catcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcatttt 83  Q
    ||||||||||||| |||||||| |||  ||| | | ||||||||||||||||| | ||||| ||| |||||||    
T  16262964 catcaacgttgcagatccggaagcatgagtattctgatgatttagattttatcatgttattcgtatgcatttt 16263036  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 31984266 - 31984346
Alignment:
Q  13 tcaacgttgcatatccggaatcataggtactataatgatttagattttatcgtattatttgtaagcattttttcgttgtat 93  Q
    ||||||||||| |||||||| ||| |||| |    ||| |||| ||||||| |||||||| |||||||||| |||||||||    
T  31984266 tcaacgttgcaaatccggaagcatgggtatttcggtgacttaggttttatcatattatttttaagcattttgtcgttgtat 31984346  T

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Target: scaffold0888 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 1630 - 1589
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgtt 89  Q
    |||||||||||||||| ||||||||||| ||||||| |||||    
T  1630 tgatttagattttatcatattatttgtaggcattttatcgtt 1589  T

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Target: scaffold0064 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 19034 - 18986
Alignment:
Q  48 tgatttagattttatcgtattatttgtaagcattttttcgttgtatact 96  Q
    |||||| ||||||||| ||||||||||| |||||||  |||||||||||    
T  19034 tgatttggattttatcatattatttgtatgcattttgccgttgtatact 18986  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 32695 - 32651
Alignment:
Q  52 ttagattttatcgtattatttgtaagcattttttcgttgtatact 96  Q
    |||||||||||| ||||||||||| ||||||| ||| ||||||||    
T  32695 ttagattttatcatattatttgtaggcattttgtcgctgtatact 32651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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