View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8003_low_2 (Length: 644)
Name: NF8003_low_2
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8003_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 250 - 634
Target Start/End: Complemental strand, 21769558 - 21769170
Alignment:
| Q |
250 |
aagcaattacatgaa-ggacccatctgtaatccatgatttaaaccagacaattttaattcactagaaaaatgaaaatacagaatgcaactgatggaagat |
348 |
Q |
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| T |
21769558 |
aagcaattacatgaaaggacccatctgtaatccatgattaaaacaagacaattttaattcgctagagaaatgaaaatacagaatgcaactggtggaagat |
21769459 |
T |
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| Q |
349 |
agaaaacttggtatagattaagtaatgtatttgtccgcaaaattataannnnnnnggaatattattat---aaatttaatgatatttcatagaaaattga |
445 |
Q |
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| T |
21769458 |
agaaaacttggtatggattaaggaatgtatttgtccgcataattataatttttt-ggaatattattattataaatttaatgatatttcatagaaaattga |
21769360 |
T |
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| Q |
446 |
ccaaatcacttgagggaaaataaa-cctggctacagctgcacaaaaatcttccatcaaacgcccaagtcaaactggtaacctgaaggatgtaaaaatgca |
544 |
Q |
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| T |
21769359 |
ccaaatcacttgagggaaaataaaacctggctacagctgcacaaaaatcttccatcaaacgcccaagtcaaactggtaacctgaaggatgtaaaaatgca |
21769260 |
T |
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| Q |
545 |
gaaatcaatagaggaatacattctgaagtcttcaaccaactccagnnnnnnncacggaaagactaaacttacagcataatgatgtccatc |
634 |
Q |
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| T |
21769259 |
gaaatcaatagaggaatacattctgaagtcttcaaccaactccagaaaaaaacacggaaagactaaacttacagcataataatgtgcatc |
21769170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 49 - 244
Target Start/End: Complemental strand, 21770224 - 21770029
Alignment:
| Q |
49 |
gaagagggacatgcaacaccatgcttgaatcatgctaggttggggatccacttaaaggttcatttatattattcacaaagaaatggttgagatccggcca |
148 |
Q |
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| T |
21770224 |
gaagagggacatgcaacaccatgcttgaattatgttaggttggggatccacttaaaggttcatttatattattcacaaagaaatggttgagatccggcta |
21770125 |
T |
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| Q |
149 |
atacagcaagaactaaacccaagtacaagatgcgtacaaatttcccaaggcattcaagagcccttttctctcccacactatacgacttacaaaaat |
244 |
Q |
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| T |
21770124 |
atacagcaagaactaaacccgagtacaagatgcgtacaaatttcctaaggcattcaagagcccttttctctcccacactatacgacttgcaaaaat |
21770029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 37937888 - 37937933
Alignment:
| Q |
195 |
aaggcattcaagagcccttttctctcccacactatacgacttacaa |
240 |
Q |
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| T |
37937888 |
aaggcattcaagaggccttttctctcccacactatatgtcttacaa |
37937933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 435 - 588
Target Start/End: Original strand, 32923597 - 32923751
Alignment:
| Q |
435 |
tagaaaattgaccaaatcacttgagggaaaataaa-cctggctacagctgcacaaaaatcttccatcaaacgcccaagtcaaactggtaacctgaaggat |
533 |
Q |
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||||||||||||| | | ||||||||||||||||| |||||||||||||||||||||| |||||| |||| |||||||| || | |||||||||||||| |
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| T |
32923597 |
tagaaaattgaccgagtaacttgagggaaaataaaacctggctacagctgcacaaaaaccttccaccaaatgcccaagttaatccagtaacctgaaggat |
32923696 |
T |
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| Q |
534 |
gtaaaaatgcagaaatcaatagaggaatacattctgaagtcttcaaccaactcca |
588 |
Q |
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| T |
32923697 |
ataaaaatggagaaatcaatagaggaatacaacctcaagtcttcaaccatctcca |
32923751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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