View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8003_low_3 (Length: 576)
Name: NF8003_low_3
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8003_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 8 - 565
Target Start/End: Original strand, 1482586 - 1483143
Alignment:
| Q |
8 |
accctaatgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482586 |
accctaatgtccatgaggtgaattgaaaaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
1482685 |
T |
|
| Q |
108 |
tgggctgagcttaatcatcttctgatgatttatagggttccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482686 |
tgggctgagcttaatcatcttctgatgatttatagggatccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
1482785 |
T |
|
| Q |
208 |
ctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtatatattacaatgtatgactataat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482786 |
ctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtatatattacaatgtatgactataat |
1482885 |
T |
|
| Q |
308 |
tttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttctttgatataatatattcttctatattacttgat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1482886 |
tttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattacttgat |
1482985 |
T |
|
| Q |
408 |
aatttttatttgagaggaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1482986 |
aatttttatttgagaggaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggttttagggagttgctgggtaaaatgtgcattgaaccaaa |
1483085 |
T |
|
| Q |
508 |
ttagtgtgtaggttttaagggttaggggtttctgggagttgctaggcatgatgtccat |
565 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1483086 |
ttagtgtgtaggatttaaggattaggggtttctgggagttgctaggcatgatgtccat |
1483143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 551
Target Start/End: Original strand, 36717320 - 36717882
Alignment:
| Q |
14 |
atgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatttgggct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| ||| |||| | |||||||||| ||| ||||||||| || |||||||||||||||| |
|
|
| T |
36717320 |
atgtccatgaggtgaattgaagaagatttaaagtgcaggaaaaa-attaaagagaattgaaggagaaatcttagagcaaatgggaaaggagatttgggct |
36717418 |
T |
|
| Q |
114 |
gagcttaatcatcttctgatgatttatagggttccaa------aagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||| || |||| | || ||||||||| ||||||||||| || |
|
|
| T |
36717419 |
gagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaacttggtgtttgatccagtttgtgtaatcttctacttgaagattatag |
36717518 |
T |
|
| Q |
208 |
ctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtatatattacaatgtatgactataat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
36717519 |
ctgtatacattttagatttttccttgcatcatcattctttgatgattttgttgcaattttggtgtaatccattgtatatattacaatgtatgactatagt |
36717618 |
T |
|
| Q |
308 |
tttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttctttgatataatatattcttctatattacttgat |
407 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| |||| ||||||||||| |
|
|
| T |
36717619 |
tttgaatcgaatgacacctatttcttttctcttaatcaaattgtttggaattcaccatgattctttgtttgataagatatatggttctctattacttgat |
36717718 |
T |
|
| Q |
408 |
aatttttatt-------------------tgagaggaagcgtggaaagaaagtgtag--gtgtatgcatggtcagctaatggtttttgggagttgctggg |
486 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||| ||||||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
36717719 |
tgttttttttttttttttttttctctttctgagaggaagcgtggaaggaaagtgtagctgtgtatgcatggttgggtaagggtttttgggagttgctggg |
36717818 |
T |
|
| Q |
487 |
taaaatgtgcattgaaccaaattagtgtgtaggttttaagggttaggggtttctgggagttgcta |
551 |
Q |
| |
|
|||||||| |||||| |||| | |||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
36717819 |
caaaatgtgtattgaatcaaaccaatgtgtaggatttaa-ggttaagggtttctgggagttgcta |
36717882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 1483267 - 1483329
Alignment:
| Q |
194 |
cttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgatttt |
256 |
Q |
| |
|
||||||||||| || |||| |||||||| ||||||||||||| || |||||| |||||||||| |
|
|
| T |
1483267 |
cttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
1483329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 36717995 - 36718065
Alignment:
| Q |
250 |
tgattttgttgcaattttggtataatccattgtatatattac-aatgtatgactataattttgaattgaat |
319 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||| |||||||| ||||||| || | |||||||||| |||| |
|
|
| T |
36717995 |
tgatcttgttgcaatttaggtgtaatccattgtctatattacaaatgtatcacaacaattttgaatcgaat |
36718065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University