View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8003_low_5 (Length: 406)
Name: NF8003_low_5
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8003_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 2 - 388
Target Start/End: Original strand, 1481902 - 1482288
Alignment:
| Q |
2 |
tggaaattggcgtttgcttacacgggtttgcggtgaaggtgttgtgtaaggttgaagatgatgtgtttatagggacaggacttgttgatatgtactcgaa |
101 |
Q |
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| T |
1481902 |
tggaaattggtgtttgcttacacgggtttgcggtgaaggtgttgtgtaaggttgaagatgatgtgtttatagggacgggacttgttgatatgtactcgaa |
1482001 |
T |
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| Q |
102 |
atgcgggtgtcttgagagtgctttgtctgttttccggcggatgaaatggaggaatgttctaacttggactgcgatgactacgggactagcaattcatggg |
201 |
Q |
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| T |
1482002 |
atgcgggtgtcttgagagtgctttgtctgttttccggcggatgaaatggaggaatgttttaacttggactgcgatgactacgggactggcaattcatggg |
1482101 |
T |
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| Q |
202 |
agaggggaagaggcgttgaaaattttgtatgagatgggaagtgatggtgtgaagccgaacgaaacaacttttacgagcttgttgtcggcttgctgtcacg |
301 |
Q |
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| T |
1482102 |
agaggggaagaggcgttgaaaattttgtatgagatgggaagtgatggtgtgaagccgaacgaaacaacttttacgagcttgttgtctgcttgttgtcacg |
1482201 |
T |
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| Q |
302 |
cagggcttgttgaagaagggcttcaattgtttcgtgatatggaagggaaatttggtgtggtgcctcggatacaacattatggttgtg |
388 |
Q |
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| T |
1482202 |
cagggcttgttgaagaagggcttcaattgtttcgtgatatggaagggaaatttggtgtggtgccttggatacaacattatggttgtg |
1482288 |
T |
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