View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8003_low_6 (Length: 401)
Name: NF8003_low_6
Description: NF8003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8003_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 24049434 - 24049825
Alignment:
| Q |
1 |
taatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacacagttctaaggccattttaacttaaattaatttaatcatattcnnnnnn |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
24049434 |
taatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacaca-ttctaagaccattctaacttaaattaatttaatcatattctttttt |
24049532 |
T |
|
| Q |
101 |
nnnnnaggccattcttgttgtctttactagtaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgc |
200 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24049533 |
ttt--aggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgc |
24049630 |
T |
|
| Q |
201 |
atttctctttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatgttcattggttagga |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24049631 |
atttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatgttcattggttagga |
24049730 |
T |
|
| Q |
301 |
gtataatattttcccaacttaaatcaatttaatcnnnnnnnnncccatggaaattctaaagtaatgttgattgatgtttgaaatggtcatcagaaa |
396 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24049731 |
gtataatattttcccaacttaaattaatttaatcttttttttt-ccatggaaattttaaagtaatgttgattgatgtttgaaatggtcatcagaaa |
24049825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 24052570 - 24052972
Alignment:
| Q |
1 |
taatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacacagttctaaggccattttaacttaaattaatttaatcatattcnnnnnn |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
24052570 |
taatatggttggctgatatgctgatgttgatcacaaagcaagaaacatacaca-ttctaagaccattctaacttaaattaatttaatcatattctttttt |
24052668 |
T |
|
| Q |
101 |
nnnnnaggccattcttgttgtctttactagtaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgc |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24052669 |
ttt--aggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatgtcaaacaagattagaataagagtagatcataaaagatcatatgc |
24052766 |
T |
|
| Q |
201 |
atttctctttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatat-------gcaaaccacagataccgcctaaatgttcattg |
293 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24052767 |
atttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaacggcaaaccacagataccgcctaaatgttcattg |
24052866 |
T |
|
| Q |
294 |
gttaggagtataatattttcccaacttaaatcaatttaatcnnnnnnnnncccatggaaattctaaagtaatgttgattgatgtttgaaatggtcatcag |
393 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
24052867 |
gttaggaatataatattttcccaacttaaattaatttaatctgtttttt--ccatggaaattttaaagtaatgttgattgttgtttgaaatggtcatcag |
24052964 |
T |
|
| Q |
394 |
aaagaaat |
401 |
Q |
| |
|
|||||||| |
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|
| T |
24052965 |
aaagaaat |
24052972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 401
Target Start/End: Original strand, 24044665 - 24044790
Alignment:
| Q |
263 |
caaaccacagataccgcctaaatgttcattggttaggagtataatattttcccaacttaaatcaatttaatcnnnnnnnnncccatggaaattctaaagt |
362 |
Q |
| |
|
|||||||||||||| || ||||||| |||| |||||| ||| ||||||||||||||||||| ||||||||| |||| |||||| |
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| T |
24044665 |
caaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatctttt-------------aattttaaagt |
24044751 |
T |
|
| Q |
363 |
aatgttgattgatgtttgaaatggtcatcagaaagaaat |
401 |
Q |
| |
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| T |
24044752 |
aatgttgattgatgtttgaaatggtcatcagaaagaaat |
24044790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 24102209 - 24102266
Alignment:
| Q |
263 |
caaaccacagataccgcctaaatgttcattggttaggagtataatattttcccaactt |
320 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||| || ||||||||||||| ||||| |
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| T |
24102209 |
caaaccacagataccgcggaaatgttgattgattacgaatataatattttcctaactt |
24102266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 24102163 - 24102203
Alignment:
| Q |
25 |
tgttgatctcaaagcaataaacatacacagttctaaggcca |
65 |
Q |
| |
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|||||| |||||||||| ||||||||| ||||||||||||| |
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| T |
24102163 |
tgttgaactcaaagcaagaaacatacaaagttctaaggcca |
24102203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 136 - 263
Target Start/End: Complemental strand, 4261422 - 4261295
Alignment:
| Q |
136 |
tttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctctttggtagtttgtatagactgactcatt |
235 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||| | |||||| ||||| ||| ||||||||| |
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| T |
4261422 |
tttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaaagatcatatgcttttttatttggtcatttgtgcagattgactcatt |
4261323 |
T |
|
| Q |
236 |
caaccgttctcatttacttctgatatgc |
263 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |
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|
| T |
4261322 |
caactgttctcatttactgctgatatgc |
4261295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 4037883 - 4037943
Alignment:
| Q |
143 |
ccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatt |
203 |
Q |
| |
|
|||| ||| ||||| ||| ||| | ||||||| |||||||||||||||||||||||||||| |
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|
| T |
4037883 |
cctttgacaaaataacaagcaataatagaatatgagtagatcataaaagatcatatgcatt |
4037943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 4027546 - 4027602
Alignment:
| Q |
134 |
actttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaa |
190 |
Q |
| |
|
||||||||||||||||| |||| || |||| | |||||||||||||| |||||||| |
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|
| T |
4027546 |
actttgatgccttggacaaaatgacagacaaaaatagaataagagtagttcataaaa |
4027602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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