View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8004_high_3 (Length: 517)
Name: NF8004_high_3
Description: NF8004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8004_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 24985443 - 24984945
Alignment:
| Q |
1 |
gtgaatttaacgcttctatatgagtcaatcgaccgacaatgatactcaacattggacacccttcttgtatctttgtgattgagacgattattaatttgat |
100 |
Q |
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| T |
24985443 |
gtgaattgaacacttctatatgagtcaatcgaccgacaatgatactcaacattggacacccttcttgtatctttgtgattgagacgattattaatttgtt |
24985344 |
T |
|
| Q |
101 |
ctagttgatccttcatatcgaatagtttgaaatcaacacgacccctaaatagattgagttttcccttgctatcgaaaactataatattatggaccacata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24985343 |
ctagttgatccttcatatcgaatagtttgaaatcaacacgacccctaaatagattgagttttcccttgctatcgaaaactataatgttatggaccacata |
24985244 |
T |
|
| Q |
201 |
agttgtagatacattgtggactagaaaaaatcatgtgtctaactagttcggattacataattcaaactaatattgtataggtttgatttatagaatttga |
300 |
Q |
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| T |
24985243 |
agttgtagatacattgtggactagaaaaaatcatgtgtctaactagttcggattacataattcaaactaatattttataggtttgatttatagaatttga |
24985144 |
T |
|
| Q |
301 |
accaagtatacacggtcttttgcaagttcttgaacttgcctccatgttttctaaacataatatgataaattaagtagaacacaatattatctaaaacgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24985143 |
accaagtatacacggtcttttgcaagttcttgaacttgcctccatgttttctaaacataatatgataaattaagtagaacacaatattatctaaaacgta |
24985044 |
T |
|
| Q |
401 |
ataaccacgtgttaacacataatattatcctaaaaaacttattcaaatataatccaaatgagataaactattaagcaaatgatagccacaacaccaatt |
499 |
Q |
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| T |
24985043 |
ataaccacgtgttaacacataatattatcctaaaaaacttattcaaatataatccaaatgagataaactattaagcaaatgatagccacaacaccaatt |
24984945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 36599661 - 36599599
Alignment:
| Q |
36 |
acaatgatactcaacattggacacccttcttgtatctttgtgattgagacgattattaatttg |
98 |
Q |
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| T |
36599661 |
acaatgatacttaacattgttcacccttcttgtatttttgcgattgagaagaccattaatttg |
36599599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 35433125 - 35433183
Alignment:
| Q |
57 |
cacccttcttgtatctttgtgattgagacgattattaatttgatctagttgatccttca |
115 |
Q |
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| T |
35433125 |
cacccttcttgcatctccgtggttgagacgatcattaatttggtctagctgatccttca |
35433183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 25577956 - 25577992
Alignment:
| Q |
79 |
ttgagacgattattaatttgatctagttgatccttca |
115 |
Q |
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| T |
25577956 |
ttgagacgatcattaatttggtctagttgatccttca |
25577992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 19565863 - 19565800
Alignment:
| Q |
317 |
cttttgcaagttcttgaacttgcctccatgttttctaaacataatatgataaattaagtagaaca |
381 |
Q |
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| T |
19565863 |
cttttacaaattcttgaacttgtgtccatcttttctgaacataatatgat-aattaagaagaaca |
19565800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 14252437 - 14252357
Alignment:
| Q |
35 |
gacaatgatactcaacattggacacccttcttgtatctttgtgattgagacgattattaatttgatctagttgatccttca |
115 |
Q |
| |
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||||| |||||||||||||| || ||||||||| |||||||| ||||||| | | |||||||| || | |||||||||| |
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| T |
14252437 |
gacaacgatactcaacattgtccatccttcttgtgtctttgtggttgagactactgttaatttggtcctgatgatccttca |
14252357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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