View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8004_high_7 (Length: 320)
Name: NF8004_high_7
Description: NF8004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8004_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 48 - 306
Target Start/End: Original strand, 52393270 - 52393528
Alignment:
| Q |
48 |
caacatttctacgtcgcagctgcctaaa-ccttgttttaaaggtgagcaaatctccttcaaaaaatttgaagatgaatatttggcaggtgtcctaaactg |
146 |
Q |
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| T |
52393270 |
caacatttctacgtcgcagctgcctaaaaccttgttttaaaggtgagcaaatctccttcaaaaaatttgaagatgaatatttggcagatgtcctagactg |
52393369 |
T |
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| Q |
147 |
tcaaaatatccttcacgggagaggttcactctcccaaagggttccacctattctatactt-nnnnnnntaatcttaagttttggaaaactaatggcccac |
245 |
Q |
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| T |
52393370 |
tcaaaatatccttcacgg--aaggttcactctcccaaagggttccacctatactatacttaaaagaaataatcttaagttttggaaaactaatggcccac |
52393467 |
T |
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| Q |
246 |
agtttcgtagaagttattttgaannnnnnnncaaccttgtatgatcacatctaagtgcagt |
306 |
Q |
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| T |
52393468 |
aatttcgtagaagttattttgaattttttttcaaccttgtatgatctcatctaagtgcagt |
52393528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 39280920 - 39280799
Alignment:
| Q |
68 |
tgcctaaaccttgttttaaaggtgagcaaatctccttcaaaaaatttgaagatgaatatttggcaggtgtcctaaactgtcaaaatatccttcacgggag |
167 |
Q |
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| T |
39280920 |
tgcctaaaccttgtcaaaaaggtgagcaaatctcgatcaaaatttctaaagacaaatatttggcaagtgtcttagactgtcaaaatgtccttcacgg--g |
39280823 |
T |
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| Q |
168 |
aggttcactctcccaaagggttcc |
191 |
Q |
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| T |
39280822 |
aggctcactctcctaaagggttcc |
39280799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 4777919 - 4777827
Alignment:
| Q |
61 |
tcgcagctgcctaaaccttgttttaaaggtgagcaaatctccttcaaaaaatttgaagatgaatatttggcaggtgtcctaaactgtcaaaat |
153 |
Q |
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| T |
4777919 |
tcgcagctacctaaaccgtgtttgaaaggtgagcaaatctctatcaaaatctctgaagattattatttggtaggtgttttaaactttcaaaat |
4777827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 16059265 - 16059357
Alignment:
| Q |
61 |
tcgcagctgcctaaaccttgttttaaaggtgagcaaatctccttcaaaaaatttgaagatgaatatttggcaggtgtcctaaactgtcaaaat |
153 |
Q |
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| T |
16059265 |
tcgcagctgcctaaaccatgtttgaaaggtgagaaaatctcgatcaaaatctctgaagatcattattcgacaggtgttttagactgtcaaaat |
16059357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 42996544 - 42996584
Alignment:
| Q |
61 |
tcgcagctgcctaaaccttgttttaaaggtgagcaaatctc |
101 |
Q |
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| T |
42996544 |
tcgcagctgcctaaaccgtgtttcaaaggtgagcaaatctc |
42996584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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