View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8004_low_11 (Length: 296)

Name: NF8004_low_11
Description: NF8004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8004_low_11
NF8004_low_11
[»] scaffold0013 (2 HSPs)
scaffold0013 (1-114)||(11251-11364)
scaffold0013 (1-113)||(16202-16314)
[»] chr1 (3 HSPs)
chr1 (1-113)||(2700872-2700984)
chr1 (1-113)||(2705892-2706004)
chr1 (8-67)||(15822887-15822947)
[»] chr2 (1 HSPs)
chr2 (1-113)||(8749341-8749453)
[»] chr6 (3 HSPs)
chr6 (1-113)||(6905669-6905782)
chr6 (1-114)||(13343971-13344095)
chr6 (6-47)||(18779460-18779501)
[»] chr3 (3 HSPs)
chr3 (1-113)||(22810640-22810763)
chr3 (6-69)||(10486563-10486626)
chr3 (70-113)||(22812662-22812705)


Alignment Details
Target: scaffold0013 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 11364 - 11251
Alignment:
Q  1 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactcttaaacaagaaaataaataatactaattaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11364 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactcttaaacaagaaaataaataatactaattaag 11265  T
Q  101 aaatatttcaacaa 114  Q
    ||||||||||||||    
T  11264 aaatatttcaacaa 11251  T

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Target: scaffold0013; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 16314 - 16202
Alignment:
Q  1 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactcttaaacaagaaaataaataatactaattaag 100  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16314 aaaagggctccttttataagagagaaatacaaagtcaactcctttatttcaggagtactataatgactcttaaacaagaaaataaataatactaattaag 16215  T
Q  101 aaatatttcaaca 113  Q
    |||||||||||||    
T  16214 aaatatttcaaca 16202  T

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Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 2700872 - 2700984
Alignment:
Q  1 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactcttaaacaagaaaataaataatactaattaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2700872 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactcttaaacaagaaaataaataatactaattaag 2700971  T
Q  101 aaatatttcaaca 113  Q
    |||||||||||||    
T  2700972 aaatatttcaaca 2700984  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 2705892 - 2706004
Alignment:
Q  1 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactcttaaacaagaaaataaataatactaattaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2705892 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactcttaaacaagaaaataaataatactaattaag 2705991  T
Q  101 aaatatttcaaca 113  Q
    |||||||||||||    
T  2705992 aaatatttcaaca 2706004  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 15822947 - 15822887
Alignment:
Q  8 ctccttttataggagagaaatacaa-agtcaactcctttatttcaggagtactataatgac 67  Q
    ||||||||||| |||  |||||||| ||||||||||||||||| ||||||| |||||||||    
T  15822947 ctccttttataagagtaaaatacaagagtcaactcctttattttaggagtaatataatgac 15822887  T

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Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 8749341 - 8749453
Alignment:
Q  1 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactcttaaacaagaaaataaataatactaattaag 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||| ||||    
T  8749341 aaaagggctccttttataggagagaaatacaaagtcaactcctttattttaggagtaatataatgattcttgaacaagaaaataaataatactaaataag 8749440  T
Q  101 aaatatttcaaca 113  Q
    |||||||||||||    
T  8749441 aaatatttcaaca 8749453  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6905669 - 6905782
Alignment:
Q  1 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgac-tcttaaacaagaaaataaataatactaattaa 99  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||| ||||  |||    
T  6905669 aaaaaggaaccttttataggagagaaatacatagtcaactcctttattttaggagtaaaataatgacttcttaaacaagaaaataaataacactacataa 6905768  T
Q  100 gaaatatttcaaca 113  Q
    |||| |||||||||    
T  6905769 gaaacatttcaaca 6905782  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13344095 - 13343971
Alignment:
Q  1 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactc-----------ttaaacaagaaaataaataa 89  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||  |||||| |||||||||||           ||||||||||||||||||||    
T  13344095 aaaagggctcctttaataggagagaaatacaaagtcaactcctttattttgggagtaatataatgactcataattaatcattaaacaagaaaataaataa 13343996  T
Q  90 tactaattaagaaatatttcaacaa 114  Q
    || ||||||||||||||||||||||    
T  13343995 tattaattaagaaatatttcaacaa 13343971  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 18779501 - 18779460
Alignment:
Q  6 ggctccttttataggagagaaatacaaagtcaactcctttat 47  Q
    |||||||||||| ||||||||||||||||| ||||| |||||    
T  18779501 ggctccttttattggagagaaatacaaagttaactcatttat 18779460  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 22810640 - 22810763
Alignment:
Q  1 aaaaaggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactc-----------ttaaacaagaaaataaataa 89  Q
    ||||||||| ||||||||||||| |||||||||||| ||| |||||||| ||||||| ||||||||| |           ||||||||||||||||||||    
T  22810640 aaaaaggcttcttttataggagaaaaatacaaagtctactactttattttaggagtaatataatgacgcataactgatcattaaacaagaaaataaataa 22810739  T
Q  90 tactaattaagaaatatttcaaca 113  Q
    ||||||||||||||||||||||||    
T  22810740 tactaattaagaaatatttcaaca 22810763  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 10486626 - 10486563
Alignment:
Q  6 ggctccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgactc 69  Q
    |||||||||||||||||| ||||||||| | ||||||||||||| ||||||| |||||||||||    
T  10486626 ggctccttttataggagaaaaatacaaaattaactcctttattttaggagtaatataatgactc 10486563  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 22812662 - 22812705
Alignment:
Q  70 ttaaacaagaaaataaataatactaattaagaaatatttcaaca 113  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  22812662 ttaaacaagaaaacacataatactaattaagaaatatttcaaca 22812705  T

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