View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8004_low_13 (Length: 235)
Name: NF8004_low_13
Description: NF8004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8004_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 34812043 - 34811843
Alignment:
| Q |
19 |
aattgttgtttccagtattttgcacacttgtttagtatctctagatacatgtagtggtgatactacctctgccatttcnnnnnnnnnttaaat-tttaaa |
117 |
Q |
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| T |
34812043 |
aattgttgtttccagtattttgcaaacttgtttagtatctctagatacatgtagtggtgatactacctctgccatttcaaaaaaaaaaaaaaaatttaaa |
34811944 |
T |
|
| Q |
118 |
atatactcctgccaatcatttttatttttataggaaactagtctgctgattttaattacaagaaattttgatcaatttttaagtgtatatggataacttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34811943 |
atatactcctgccaatcatttttatttttataggaaactagtctgctgattttaattacaagaaattttgatcaatttttaagtgtatatggataacttc |
34811844 |
T |
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| Q |
218 |
a |
218 |
Q |
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| |
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| T |
34811843 |
a |
34811843 |
T |
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