View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8004_low_14 (Length: 234)
Name: NF8004_low_14
Description: NF8004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8004_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 498555 - 498748
Alignment:
| Q |
14 |
aagaatattgttgaaaccattatgattaggcacagagagagttttctccatctccgaggagattggctcggggatagtttgggattcactctcttctgca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
498555 |
aagaatattgttgaaaccattatgattaggcacagagagagttttctccatctccgaggagattggctcggggatagtttgggattcactctcttctgca |
498654 |
T |
|
| Q |
114 |
aggttattttcttcgtccattgaatacatttctaatattttatctcttttcttaattcggattctgaaatttttcagttcccatcaatttatta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
498655 |
aggttattttcttcgtccattgaatacatttctaatattttatctcttttcttaattcggattctgaaatttttcagttcccatcaatttatta |
498748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 8221906 - 8222021
Alignment:
| Q |
28 |
aaccattatgattaggcacagagagagttttctccatctccgaggagattggctcggggatagtttgggattcactctcttctgcaaggttattttcttc |
127 |
Q |
| |
|
|||||||||||||||||| | | |||||||||| | ||| ||||||||||||||| | | ||| ||| |||||| ||| |||| || | || |||||| |
|
|
| T |
8221906 |
aaccattatgattaggcaaataaagagttttcttcttctacgaggagattggctctgagctagattgagattcattcttttctacacattgatcttcttc |
8222005 |
T |
|
| Q |
128 |
gtccattgaatacatt |
143 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
8222006 |
atctattgaatacatt |
8222021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 19002695 - 19002604
Alignment:
| Q |
96 |
gattcactctcttctgcaaggttattttcttcgtccattgaat-acatttctaatattttatctcttttcttaattcggattctgaaattttt |
187 |
Q |
| |
|
||||||||||||||| |||| | ||||||||| |||||||||| | |||||| || ||||||||||| || ||||||||| |||||||||| |
|
|
| T |
19002695 |
gattcactctcttctacaagttcattttcttcatccattgaataagttttctacta-tttatctctttgattgattcggattttgaaattttt |
19002604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 34084153 - 34084236
Alignment:
| Q |
28 |
aaccattatgattaggcacagagagagttttctccatctccgaggagattggct-cggggatagtttgggattcactctcttct |
110 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||| ||||| |||||| | ||| ||| ||||||||||||| ||||| |
|
|
| T |
34084153 |
aaccattatggttaggcagagagaaagttttctccatctatgaggaacttggctcctggggtagattgggattcactcccttct |
34084236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University